Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45090 229 / 3e-70 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G60760 228 / 1e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021446 [exp] 348 / 1e-121 AT3G45090 229 / 8e-71 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G009200 [exp] 310 / 9e-101 AT5G60760 849 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G213500 [exp] 311 / 2e-100 AT5G60760 850 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016117 pacid=23171831 polypeptide=Lus10016117 locus=Lus10016117.g ID=Lus10016117.BGIv1.0 annot-version=v1.0 ATGTTTCAGCTCATTCAGAGGCAGGGCTCGTCTAGACATTTGATGGCTCTTCTCAATACTGACGGCTCTGTAGCCAAGGCTTGGCCTGTGGGTCCCGTGG ATAAAAACGGGAAGCCTCTTCTTGGCCATGGTGTTGATAACGGGATTGGGGTTCCTATGTATGGTCCGCTGCAGATTGGAAAGGCTGAACCGGTGAATTT GCAGTTTGGTCACTTTGGGATTAGTGCTTGGCCGAGTGATGGCGGAACGAGCCATGCAGGGAGTATCGATGAGAGGGCTGATGGGACTGATACTGGAAGT AAGTACCAGTCTTCGTGCTGTAGCTCCCCCAGGACCTCCGACGGACCTGCCAAGGAGCTCAAGGAGGAAACCTCGGTCCATGGCAGCGATGATGAAGAAG AAGTTGACGATGACCCGCCCGAAATGGACAGTGATGAAGATCTCAGTGATAACGACGACGAGCTTGCACATGACGAGGTTGGTTCGGTCGACGAGGAGTC GACAAAGTCAGACGAGGAGTATGATGACCTGGCAATGGAAGACATGGATGAGAATGGGTACAGGACAGATGACGAAGAAGAGTCGGAGGACAAGCTACAG CCGATAGACGGGTCGGACAAGTATCGGCAGAATCTCGACCGCTTCCTTCGGAGCAGGAGCGAGCGGTTCAGCGGAAGCGAGCCTTTGTGTTCTTACACTT CCCTCTTAGGGGAGAAGGGTGGCACCACGCCAGGGAGGGAGACGATCAAAGCGAGAAGGCGACGTTCGCTCAGCATTTCGGCCATCGGAAAACATGGGTA TCGTTCCGATGCAGCGGTCAACACTGGCCCCATATTGTCTGGTACTCCTCTGAGCTAG
AA sequence Show only first row Show all	>Lus10016117 pacid=23171831 polypeptide=Lus10016117 locus=Lus10016117.g ID=Lus10016117.BGIv1.0 annot-version=v1.0 MFQLIQRQGSSRHLMALLNTDGSVAKAWPVGPVDKNGKPLLGHGVDNGIGVPMYGPLQIGKAEPVNLQFGHFGISAWPSDGGTSHAGSIDERADGTDTGS KYQSSCCSSPRTSDGPAKELKEETSVHGSDDEEEVDDDPPEMDSDEDLSDNDDELAHDEVGSVDEESTKSDEEYDDLAMEDMDENGYRTDDEEESEDKLQ PIDGSDKYRQNLDRFLRSRSERFSGSEPLCSYTSLLGEKGGTTPGRETIKARRRRSLSISAIGKHGYRSDAAVNTGPILSGTPLS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60760			P-loop containing nucleoside t...		Lus10016117 [exp]	0	1
					Lus10037782 [exp]	3.5	0.9587
AT1G32160			Protein of unknown function (D...		Lus10035392 [exp]	7.4	0.9688
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Lus10030531 [exp]	17.7	0.9650
AT3G05550			Hypoxia-responsive family prot...		Lus10020658 [exp]	17.9	0.9592
AT3G05550			Hypoxia-responsive family prot...		Lus10029883 [exp]	18.3	0.9609
AT1G71695			Peroxidase superfamily protein...		Lus10028689 [exp]	19.6	0.9612
AT5G60335			Thioesterase superfamily prote...		Lus10031971 [exp]	23.3	0.9620
AT3G48320		CYP71A21	"cytochrome P450, family 71, s...		Lus10043311 [exp]	23.7	0.9620
AT1G13080		CYP71B2	"cytochrome P450, family 71, s...		Lus10043312 [exp]	29.3	0.9611
AT5G11880			Pyridoxal-dependent decarboxyl...		Lus10004154 [exp]	36.4	0.9601

Compare expression of checked genes

Lus10016117 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.