Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60770 176 / 1e-53 ATNRT2.4 ARABIDOPSIS THALIANA NITRATE TRANSPORTER 2.4, nitrate transporter 2.4 (.1) AT1G08100 176 / 1e-53 NRT2;2AT, ACH2, ATNRT2.2 nitrate transporter 2.2 (.1) AT1G08090 176 / 2e-53 LIN1, ACH1, NRT2;1AT, ATNRT2:1 LATERAL ROOT INITIATION 1, nitrate transporter 2:1 (.1) AT3G45060 162 / 3e-48 ATNRT2.6 ARABIDOPSIS THALIANA HIGH AFFINITY NITRATE TRANSPORTER 2.6, high affinity nitrate transporter 2.6 (.1) AT5G60780 158 / 7e-47 ATNRT2.3 ARABIDOPSIS THALIANA NITRATE TRANSPORTER 2.3, nitrate transporter 2.3 (.1) AT1G12940 148 / 3e-43 ATNRT2.5 nitrate transporter2.5 (.1) AT5G14570 114 / 8e-31 ATNRT2.7 high affinity nitrate transporter 2.7 (.1) AT4G14358 53 / 4e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016121 [exp] 218 / 9e-71 AT1G08090 583 / 0.0 LATERAL ROOT INITIATION 1, nitrate transporter 2:1 (.1) Lus10030902 [exp] 152 / 1e-44 AT1G12940 751 / 0.0 nitrate transporter2.5 (.1) Lus10030588 [exp] 150 / 8e-44 AT1G12940 737 / 0.0 nitrate transporter2.5 (.1) Lus10026527 [exp] 147 / 1e-42 AT5G60770 759 / 0.0 ARABIDOPSIS THALIANA NITRATE TRANSPORTER 2.4, nitrate transporter 2.4 (.1) Lus10013042 [exp] 146 / 2e-42 AT1G12940 635 / 0.0 nitrate transporter2.5 (.1) Lus10025421 [exp] 93 / 2e-24 ND 193 / 1e-59 Lus10008767 [exp] 78 / 1e-17 AT5G14570 483 / 1e-168 high affinity nitrate transporter 2.7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G008500 [exp] 182 / 4e-56 AT1G08090 830 / 0.0 LATERAL ROOT INITIATION 1, nitrate transporter 2:1 (.1) Potri.009G008600 [exp] 182 / 4e-56 AT1G08090 832 / 0.0 LATERAL ROOT INITIATION 1, nitrate transporter 2:1 (.1) Potri.T124608 [exp] 156 / 4e-46 AT1G12940 688 / 0.0 nitrate transporter2.5 (.1) Potri.015G081300 [exp] 156 / 4e-46 AT1G12940 698 / 0.0 nitrate transporter2.5 (.1) Potri.T124708 [exp] 154 / 2e-45 AT1G12940 684 / 0.0 nitrate transporter2.5 (.1) Potri.012G087700 [exp] 150 / 2e-44 AT1G12940 640 / 0.0 nitrate transporter2.5 (.1) Potri.001G348300 [exp] 129 / 2e-36 AT5G14570 509 / 1e-178 high affinity nitrate transporter 2.7 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016119 pacid=23171850 polypeptide=Lus10016119 locus=Lus10016119.g ID=Lus10016119.BGIv1.0 annot-version=v1.0 ATGGCAAACCCACAAAACCTCTCATCCTTCTCCATTGCCGCAGCGGTCCCTGATGAGTCTGCGAAGAAATTCGATTTGCCGGTTGATTCAGAGCACAAGG CGACCACGTTTAAACTCTTCTCATTTGCAAACCCTCACATGAGGACATTCCACTTGTCGTGGATCTCATTCTTCACTTGCTTTGTCTCCACCTTTGCGGC TGCGCCACTTGTCCCGATTATTCGGGACAACCTTAACATCACCAAGAGTGACATCGGTAACGCCGGCGTTGCATCCGTATCCGGAAGCATCTTCTCTAGG CTCGTCATGGGTGCTGTTTGTGACTTGTTGGGTCCTAGTAACTCTGGCTTTTGGATAGGCTTGGCAATGGGTCGGTTATGGGGCGGTTACACCCTATCCG TTGCCCGTTAA
AA sequence Show only first row Show all	>Lus10016119 pacid=23171850 polypeptide=Lus10016119 locus=Lus10016119.g ID=Lus10016119.BGIv1.0 annot-version=v1.0 MANPQNLSSFSIAAAVPDESAKKFDLPVDSEHKATTFKLFSFANPHMRTFHLSWISFFTCFVSTFAAAPLVPIIRDNLNITKSDIGNAGVASVSGSIFSR LVMGAVCDLLGPSNSGFWIGLAMGRLWGGYTLSVAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60770		ATNRT2.4	ARABIDOPSIS THALIANA NITRATE T...		Lus10016119 [exp]	0	1
AT4G02160			unknown protein		Lus10010018 [exp]	1.0	0.8627
AT1G08090		LIN1, ACH1, NRT...	LATERAL ROOT INITIATION 1, nit...		Lus10016120 [exp]	3.5	0.8375
AT2G40220	AP2_ERF	ATABI4, GIN6, S...	SUCROSE UNCOUPLED 6, SUGAR-INS...		Lus10009834 [exp]	4.9	0.8356
					Lus10006287 [exp]	5.1	0.8466
AT3G43660			Vacuolar iron transporter (VIT...		Lus10029776 [exp]	5.3	0.8157
AT1G14200			RING/U-box superfamily protein...		Lus10005237 [exp]	5.9	0.8206
AT1G63740			Disease resistance protein (TI...		Lus10010546 [exp]	6.0	0.8197
AT4G24900			unknown protein		Lus10024906 [exp]	7.0	0.7053
AT2G32235			unknown protein		Lus10008093 [exp]	8.9	0.7975
AT2G36880		MAT3	methionine adenosyltransferase...		Lus10023007 [exp]	9.5	0.7697

Compare expression of checked genes

Lus10016119 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.