Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60770 584 / 0 ATNRT2.4 ARABIDOPSIS THALIANA NITRATE TRANSPORTER 2.4, nitrate transporter 2.4 (.1) AT1G08100 560 / 0 NRT2;2AT, ACH2, ATNRT2.2 nitrate transporter 2.2 (.1) AT5G60780 524 / 0 ATNRT2.3 ARABIDOPSIS THALIANA NITRATE TRANSPORTER 2.3, nitrate transporter 2.3 (.1) AT1G12940 427 / 7e-147 ATNRT2.5 nitrate transporter2.5 (.1) AT1G08090 427 / 2e-146 LIN1, ACH1, NRT2;1AT, ATNRT2:1 LATERAL ROOT INITIATION 1, nitrate transporter 2:1 (.1) AT3G45060 356 / 1e-118 ATNRT2.6 ARABIDOPSIS THALIANA HIGH AFFINITY NITRATE TRANSPORTER 2.6, high affinity nitrate transporter 2.6 (.1) AT5G14570 267 / 2e-84 ATNRT2.7 high affinity nitrate transporter 2.7 (.1) AT4G14358 54 / 3e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016120 [exp] 579 / 0 AT1G08090 533 / 0.0 LATERAL ROOT INITIATION 1, nitrate transporter 2:1 (.1) Lus10030902 [exp] 420 / 9e-144 AT1G12940 751 / 0.0 nitrate transporter2.5 (.1) Lus10030588 [exp] 412 / 5e-141 AT1G12940 737 / 0.0 nitrate transporter2.5 (.1) Lus10026527 [exp] 384 / 1e-129 AT5G60770 759 / 0.0 ARABIDOPSIS THALIANA NITRATE TRANSPORTER 2.4, nitrate transporter 2.4 (.1) Lus10013042 [exp] 384 / 2e-129 AT1G12940 635 / 0.0 nitrate transporter2.5 (.1) Lus10021444 [exp] 291 / 2e-96 AT5G60770 307 / 1e-101 ARABIDOPSIS THALIANA NITRATE TRANSPORTER 2.4, nitrate transporter 2.4 (.1) Lus10016119 [exp] 219 / 9e-71 AT5G60770 177 / 4e-54 ARABIDOPSIS THALIANA NITRATE TRANSPORTER 2.4, nitrate transporter 2.4 (.1) Lus10008767 [exp] 154 / 6e-42 AT5G14570 483 / 1e-168 high affinity nitrate transporter 2.7 (.1) Lus10025421 [exp] 134 / 3e-37 ND 193 / 1e-59
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G008600 [exp] 629 / 0 AT1G08090 832 / 0.0 LATERAL ROOT INITIATION 1, nitrate transporter 2:1 (.1) Potri.009G008500 [exp] 628 / 0 AT1G08090 830 / 0.0 LATERAL ROOT INITIATION 1, nitrate transporter 2:1 (.1) Potri.012G087700 [exp] 453 / 2e-157 AT1G12940 640 / 0.0 nitrate transporter2.5 (.1) Potri.T124608 [exp] 399 / 1e-135 AT1G12940 688 / 0.0 nitrate transporter2.5 (.1) Potri.015G081300 [exp] 310 / 8e-101 AT1G12940 698 / 0.0 nitrate transporter2.5 (.1) Potri.T124708 [exp] 306 / 2e-99 AT1G12940 684 / 0.0 nitrate transporter2.5 (.1) Potri.001G348300 [exp] 254 / 8e-80 AT5G14570 509 / 1e-178 high affinity nitrate transporter 2.7 (.1) Potri.004G213716 [exp] 96 / 2e-24 AT1G08090 105 / 1e-28 LATERAL ROOT INITIATION 1, nitrate transporter 2:1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016121 pacid=23171823 polypeptide=Lus10016121 locus=Lus10016121.g ID=Lus10016121.BGIv1.0 annot-version=v1.0 ATGGAAAACTCACAAAACCTCTCATCCTTCTCTATCGCCGCTGCAGTTCCCAATGAGGCTGCGACAAAATTTGATCTACCGGTTGATTCAGAGCACAAGG CGACCACGTTCAAGCTATTTTCCTTTGCGAACCCTCATATGAGGACGTTTCACTTGTCGTGGATCTCGTTCTTCACCTGCTTCGTCTCTACTTTTGCGGC CGCGCCACTTGTCCCGATTATTCGGGACAACCTTAACATCACCAAGAGTGATATTGGTAACGCTGGCGTCGCATCTGTCTCCGGTAGCATCTTCTCTAGG CTCGTCATGGGGGCTGTTTGTGACTTGTTGGGTCCTAGGTACGGCTGCGCGTTCCTGGTGATGCTCTCGGCGCCGACGGTGTTCTGCATGTCGTTCGTGT CAGATGCTAGCGGCTACGTGGCGTCAACCGCACAGCCGCCAGCCGCCGGGTGGGGGAACATGGGAGGCGGCGCGACGCAGCTGATCATGCCCATAGTCTA CGAGATTATCCGACGAGCCGGAGCGACGCCGTTCACTGCATGGAGGATAGCGTTCTTCATCCCCGGTTGGCTCCAAGTCATCATGGGTATTATGGTTTTG ACTTTGGGTCAAGACTTGCCCGATGGTAATTTGGGTGCTTTGCAGAAGAAGGGTGACGTGGCCAAAGATAAATTCTCCAAGGTTTTGTGGCATGCTCTTA GTAACTATAGGACATGGATCTTTGCTCTTCTGTATGGCTACTCTATGGGAGTTGAGTTGTCTACAGATAATGTCGTGGCCGAATACTTCTACGACAGGGC CAACACTCTCCCGATCGCCATCCTCTCCATGATCCTATTCTCCGTCGGCGTCCAGGCCGCCTGTGGGGCCACCTTCGGGGTCATCCCTTTCGTCTCTCGC CGCTCCCTGGGGATCCTGTCCGGCCTGACAGGTGCAGGAGGAAACTTCGGGTCGGGGTTGACCCAGCTCATCTTCTTCTCCACCAACAAGTACTCCACCG AGGCCGGGCTATCGCTCATGGGGATTATGATCATCTGTTGCACGCTTCCGGTGACGTTGGTCCACTTCCCGCAGTGGGGAGGGATGTTCACCACGCCCTC AAAGGACCCGGTGAAGTCGGAGGAGGAGTATTACTACGGGTTGGAGTGGAGCGAGGAGGAGAAGGAACAGGGTTTGCATGCTAACAGCATGAAGTTTGCT AAGAACTGTCGGTCCGAGCGTGGGCCCAGTCGCAGGGCGGTTGTTTCTGCTCAGACCCCACCCGGATCAACCCCTAATAATGTTTGA
AA sequence Show only first row Show all	>Lus10016121 pacid=23171823 polypeptide=Lus10016121 locus=Lus10016121.g ID=Lus10016121.BGIv1.0 annot-version=v1.0 MENSQNLSSFSIAAAVPNEAATKFDLPVDSEHKATTFKLFSFANPHMRTFHLSWISFFTCFVSTFAAAPLVPIIRDNLNITKSDIGNAGVASVSGSIFSR LVMGAVCDLLGPRYGCAFLVMLSAPTVFCMSFVSDASGYVASTAQPPAAGWGNMGGGATQLIMPIVYEIIRRAGATPFTAWRIAFFIPGWLQVIMGIMVL TLGQDLPDGNLGALQKKGDVAKDKFSKVLWHALSNYRTWIFALLYGYSMGVELSTDNVVAEYFYDRANTLPIAILSMILFSVGVQAACGATFGVIPFVSR RSLGILSGLTGAGGNFGSGLTQLIFFSTNKYSTEAGLSLMGIMIICCTLPVTLVHFPQWGGMFTTPSKDPVKSEEEYYYGLEWSEEEKEQGLHANSMKFA KNCRSERGPSRRAVVSAQTPPGSTPNNV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08090		LIN1, ACH1, NRT...	LATERAL ROOT INITIATION 1, nit...		Lus10016121 [exp]	0	1
AT3G15280			unknown protein		Lus10005404 [exp]	26.4	0.6678
AT1G71160		KCS7	3-ketoacyl-CoA synthase 7 (.1)		Lus10031486 [exp]	42.4	0.6369
AT4G39250	MYB	RSM2, ATRL1	RADIALIS-LIKE SANT/MYB 2, RAD-...		Lus10014307 [exp]	70.4	0.6305
AT4G30320			CAP (Cysteine-rich secretory p...		Lus10015522 [exp]	99.0	0.6173
AT5G60770		ATNRT2.4	ARABIDOPSIS THALIANA NITRATE T...		Lus10016119 [exp]	120.7	0.5912
AT5G26650	MADS	AGL36	AGAMOUS-like 36 (.1)		Lus10016180 [exp]	128.9	0.6059
AT3G24300		ATAMT1;3, AMT1;...	ammonium transporter 1;3 (.1)		Lus10004761 [exp]	143.7	0.6031
					Lus10022637 [exp]	148.0	0.6028
AT1G69480			EXS (ERD1/XPR1/SYG1) family pr...		Lus10004285 [exp]	172.2	0.5683
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10031579 [exp]	227.0	0.5707

Compare expression of checked genes

Lus10016121 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.