Plant FIBer expression Database

Lus10016122 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G24270 45 / 1e-05 EMB140 EMBRYO DEFECTIVE 140 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021443
[exp]
113 / 1e-32 ND /
Lus10038132
[exp]
66 / 1e-12 AT5G49810 192 / 5e-54 methionine S-methyltransferase (.1)
Lus10005168
[exp]
0 / 1 AT4G24270 764 / 0.0 EMBRYO DEFECTIVE 140 (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G229732
[exp]
58 / 6e-10 AT4G24270 860 / 0.0 EMBRYO DEFECTIVE 140 (.1.2)
Potri.004G213900
[exp]
53 / 2e-09 ND /
Potri.010G226200
[exp]
44 / 7e-06 ND /
Potri.009G008300
[exp]
43 / 1e-05 ND /
Potri.008G036000
[exp]
43 / 1e-05 ND /
PFAM info
Representative CDS sequence
>Lus10016122 pacid=23171797 polypeptide=Lus10016122 locus=Lus10016122.g ID=Lus10016122.BGIv1.0 annot-version=v1.0
ATGAACTCCTCCTCCTCCCCTCGTCATTTTTCGTTAAAAACTCCGATACTCCTTCTGATAGTAGTGGTGTTCGCACTTGTGAGAACGAGTCAGGGCATTC
GTGACATCCCTCCTCAGCCCTCGAGCGGTCCGAGCACTGTGGTTCTTCACAATGTCCCTTCGTCATTGTCAATGTCATCTCCACCGAGGAGGAATCATGA
CACGAAGGCTCGTAGCGTGTTCGGTAGGAAGGAAGTGAAGAACTGTCTTCCGAAAGGGTTTAGGCACACATCGGCTCCTTCTAGATATATACAGCATGAC
AAGTTTACGGGAATTCGAGGGGCACTAGCGTACGTCGACTTCTCCAACGACGAGCATCTTGCTGCTGCTGTAACGAAGAACAAGCAGACGCTTGGTAAAA
GGTTGAGCATCCAGGGAGGCTGGAGGTTTCAAGCCTGCTACACGGTGGGCAGAATGAGAATTTGCAGAACACGTTTGCAGTGCCACGAAGCATGGTTAAC
GACGAGTTTAGGAAAATGTTCAATAAAGGTTGCAGTAGATTTGGTTCAAAACATCAATTACAGTGCAAGGCTTAACTAG
AA sequence
>Lus10016122 pacid=23171797 polypeptide=Lus10016122 locus=Lus10016122.g ID=Lus10016122.BGIv1.0 annot-version=v1.0
MNSSSSPRHFSLKTPILLLIVVVFALVRTSQGIRDIPPQPSSGPSTVVLHNVPSSLSMSSPPRRNHDTKARSVFGRKEVKNCLPKGFRHTSAPSRYIQHD
KFTGIRGALAYVDFSNDEHLAAAVTKNKQTLGKRLSIQGGWRFQACYTVGRMRICRTRLQCHEAWLTTSLGKCSIKVAVDLVQNINYSARLN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G24270 EMB140 EMBRYO DEFECTIVE 140 (.1.2) Lus10016122
[exp]
0 1
Lus10039807
[exp]
1.0 0.9013
AT2G02800 Kin2, APK2B protein kinase 2B (.1.2) Lus10042192
[exp]
3.0 0.8658
AT4G38840 SAUR-like auxin-responsive pro... Lus10008999
[exp]
3.2 0.8779
AT4G38840 SAUR-like auxin-responsive pro... Lus10008995
[exp]
4.0 0.8608
AT5G44785 OSB3 organellar single-stranded DNA... Lus10002722
[exp]
7.4 0.8351
AT4G38840 SAUR-like auxin-responsive pro... Lus10009624
[exp]
7.7 0.8568
AT4G34770 SAUR-like auxin-responsive pro... Lus10038192
[exp]
8.1 0.8536
Lus10021443
[exp]
8.3 0.8024
Lus10040168
[exp]
8.7 0.8199
AT5G14510 ARM repeat superfamily protein... Lus10022275
[exp]
11.4 0.8360

Lus10016122 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.