Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28070 952 / 0 ABCG3 ATP-binding cassette G3, ABC-2 type transporter family protein (.1) AT1G17840 330 / 3e-103 AtABCG11, WBC11, DSO, ABCG11 ,COF1, ATWBC11 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) AT3G21090 316 / 5e-98 ABCG15 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) AT1G51500 306 / 4e-94 AtABCG12, WBC12, ABCG12, D3, CER5, ATWBC12 ECERIFERUM 5, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX 12, ATP-binding cassette G12, ABC-2 type transporter family protein (.1) AT1G51460 285 / 1e-86 ABCG13 ATP-binding cassette G13, ABC-2 type transporter family protein (.1) AT1G31770 152 / 8e-39 ABCG14 ATP-binding cassette G14, ATP-binding cassette 14 (.1) AT5G06530 152 / 1e-38 AtABCG22, ABCG22 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) AT2G01320 150 / 6e-38 ABCG7 ATP-binding cassette G7, ABC-2 type transporter family protein (.1.2.3.4) AT3G52310 150 / 8e-38 ABCG27 ATP-binding cassette G27, ABC-2 type transporter family protein (.1) AT1G71960 146 / 1e-36 ATABCG25, ABCG25 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021440 [exp] 1173 / 0 AT2G28070 1068 / 0.0 ATP-binding cassette G3, ABC-2 type transporter family protein (.1) Lus10037384 [exp] 889 / 0 AT2G28070 1084 / 0.0 ATP-binding cassette G3, ABC-2 type transporter family protein (.1) Lus10041333 [exp] 881 / 0 AT2G28070 1007 / 0.0 ATP-binding cassette G3, ABC-2 type transporter family protein (.1) Lus10027354 [exp] 316 / 8e-98 AT3G21090 868 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10040644 [exp] 315 / 2e-97 AT1G17840 1120 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Lus10009959 [exp] 313 / 1e-96 AT3G21090 860 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10023154 [exp] 311 / 3e-96 AT1G17840 613 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Lus10000339 [exp] 292 / 3e-89 AT1G51460 837 / 0.0 ATP-binding cassette G13, ABC-2 type transporter family protein (.1) Lus10009960 [exp] 283 / 8e-86 AT3G21090 855 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G214000 [exp] 1003 / 0 AT2G28070 1069 / 0.0 ATP-binding cassette G3, ABC-2 type transporter family protein (.1) Potri.009G008200 [exp] 987 / 0 AT2G28070 1018 / 0.0 ATP-binding cassette G3, ABC-2 type transporter family protein (.1) Potri.018G152600 [exp] 336 / 2e-105 AT1G17840 1152 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.017G155300 [exp] 334 / 8e-105 AT1G17840 1174 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.009G051300 [exp] 328 / 2e-102 AT3G21090 943 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.001G312300 [exp] 322 / 4e-100 AT1G17840 624 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.001G255800 [exp] 320 / 2e-99 AT3G21090 1038 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.001G311300 [exp] 320 / 2e-99 AT1G17840 617 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.009G051200 [exp] 312 / 2e-96 AT3G21090 1008 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.001G255900 [exp] 312 / 2e-96 AT3G21090 929 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10016125 pacid=23171858 polypeptide=Lus10016125 locus=Lus10016125.g ID=Lus10016125.BGIv1.0 annot-version=v1.0 ATGGAAGAAATACAGTCTCAATCAGACAACTACGAAGCTTCATCATCCTCAGCAAGCAGTCCACCTAGCAGGGTGCCTTCAAGCAACTTCTTCTACATGA GGAACCCAGGTGCTACTAAACAACCCATTTCGTTCGAGGATTCTCCCGAATGGGAGGACACAGACTTGGAAATCTCGATCAAGAACGTGTCCCCTTCGTT TTCAAAGCTCAATCGCGGTTCGTTGCCCTCTCCACCTATGCACCCTGCCGAGAGTGCTGCCTCTGCAGTGAGAAAGATAGCTGGAGCTTATGTTGTGTGG AAAGACTTGACTGTTACTATTGATGGGAAGAGGAAGTACTCTGATAAGGTTGTCAAGAGCTCGAGCGGGTTCGCTTTTCCCGGTACAATGACCGTCATTA TGGGGCCTGCTCGGTGTGGCAAATCCACCCTTCTCAGGGCCATTGCAGGAAGGTTGCCTCAGTCAGCCATAATGCACGGTGAAGTGTTTGTAAATGGCAC AACGTCACCCATGCCTTATGGCTCATATGGTTTCGTCGAGAGAGAAACGATGCTGATCGGATCCCTCACGGTCCGCGAGTACCTCTACTACTCGGCTTTG CTTCAACTCCCCGGCATCATCTGCAGGAAGAAGAGTGTAGTCGATGATGCCATCCACGCCATGTCATTGACCGACTATGCAAACAAGTTGATCGGAGGTC AATGCCACATGAAGGGCCTTCCACGTGGCGAGAGGAGGCGGGTTAGCATTGCGAGGGAGCTCGTGATGAGACCGAATGTCTTGTTCATTGATGAGCCCCT TTATCACCTTGACAGTGTGTCTGCACTTCTGATGATGGTCACCTTGAAGAAACTTGCTACAACTGGATGCACTATATTCTTCACCTTGTACCAGAGTAGC ACAGAGGTGTTTGGTCTCTTCGACCGGATCTGCCTACTCTCGAACGGGAACACGTTGTTCTTCGGAGAAACATTGGCTTGCTTGCAGCACTTCTCAAATG CTGGATTCCCATGCCCTATAATGCAAAGTCCGTCGGATCACTTCTTGCGCGCTATTAACACCGATTTCGACCGGATCATTGCTATGTGCAAAAACTGGCA GGACGACCATGGAGATTTCTCGGCTGTGAATATGGACACTGCTGTCGCGATACGTACACTCGAAGCAACGTATCGACAATCGGCTGATGCTGCTGCGGTC GAAACCATGATTCTTAGACTCACTGAAAGGGAAGGTCCAGTGCTGAAAACAAAGGGAAGAGCTGGATATGGTACAAGAGTTGTAGTCTTAACATGGAGAT CTTTACTCATTATGTCAAGAGAATGGAAGTACTACTGGCTTCGACTCATTATCTACATGGCTCTTACGCTATGCATCTGTACCGTGTTCTCTGGGTTGGG GCATTCCCTGTCTTCAGTTGTGACGAGAGTCGCAGCAGTATTCGTCTTCGTGTCGTTCACATCACTTCTAAGCATAGCCGGAGTGCCAGCACTTCTGAAA GAAGTCAAGGTACACTCAAGTGAAGCATCAAACAAGCATTCAGGAACACTAGTATTCTTGCTCGGCCAGTTCCTCGCGAGCATACCGTTCTTATTCATCA TGTCCATCTCCTCGAGCCTCGTCTTCTACTTCCTGATCGGTCTGAGAGACGATTTCGCCCTTTTGATGTACTTTGTCCTCAACTTCTTCCTGTGCTTGCT TGTGAATGAAGGGCTAATGCTTCTTGTCATCTCCCTTTGGCAACACTTGTTTTGGAGTGTCCTCACATTGGCATCCATCCATGGTCTTCTCGAGAATGAA TACCTAGTGACTACATTCGCGGTAGGCCAAGTGAGGACCATTTCAGGGTACCAAGCCATTCAAAGCGCCTTTGATATTTCGACCGATAGCAGTGCCAAGT GGAAGAACGTGCTGGTGTTGATGATCATGGTCATTGTGTACCAAATTCTCGTGTTCTTCGTGCTCCATTTTCGGACGGGGAAGAATGAGTACATAATTAA GATGTGGAGGTCTAGATATCATGGTAATAACAACATCTCAAGATGA
AA sequence Show only first row Show all	>Lus10016125 pacid=23171858 polypeptide=Lus10016125 locus=Lus10016125.g ID=Lus10016125.BGIv1.0 annot-version=v1.0 MEEIQSQSDNYEASSSSASSPPSRVPSSNFFYMRNPGATKQPISFEDSPEWEDTDLEISIKNVSPSFSKLNRGSLPSPPMHPAESAASAVRKIAGAYVVW KDLTVTIDGKRKYSDKVVKSSSGFAFPGTMTVIMGPARCGKSTLLRAIAGRLPQSAIMHGEVFVNGTTSPMPYGSYGFVERETMLIGSLTVREYLYYSAL LQLPGIICRKKSVVDDAIHAMSLTDYANKLIGGQCHMKGLPRGERRRVSIARELVMRPNVLFIDEPLYHLDSVSALLMMVTLKKLATTGCTIFFTLYQSS TEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAINTDFDRIIAMCKNWQDDHGDFSAVNMDTAVAIRTLEATYRQSADAAAV ETMILRLTEREGPVLKTKGRAGYGTRVVVLTWRSLLIMSREWKYYWLRLIIYMALTLCICTVFSGLGHSLSSVVTRVAAVFVFVSFTSLLSIAGVPALLK EVKVHSSEASNKHSGTLVFLLGQFLASIPFLFIMSISSSLVFYFLIGLRDDFALLMYFVLNFFLCLLVNEGLMLLVISLWQHLFWSVLTLASIHGLLENE YLVTTFAVGQVRTISGYQAIQSAFDISTDSSAKWKNVLVLMIMVIVYQILVFFVLHFRTGKNEYIIKMWRSRYHGNNNISR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28070		ABCG3	ATP-binding cassette G3, ABC-2...		Lus10016125 [exp]	0	1
AT2G28070		ABCG3	ATP-binding cassette G3, ABC-2...		Lus10021440 [exp]	1.0	0.9241
AT5G04810			pentatricopeptide (PPR) repeat...		Lus10043434 [exp]	3.2	0.9234
AT3G13180			NOL1/NOP2/sun family protein /...		Lus10016622 [exp]	5.5	0.8831
AT2G04270		RNEE/G	RNAse E/G-like (.1.2.3.4.5)		Lus10036417 [exp]	5.5	0.9170
AT3G20440		EMB2729, BE1	EMBRYO DEFECTIVE 2729, BRANCHI...		Lus10000912 [exp]	6.9	0.8737
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10042901 [exp]	9.2	0.8569
AT2G32630			Pentatricopeptide repeat (PPR-...		Lus10042016 [exp]	9.5	0.8525
					Lus10006129 [exp]	12.0	0.8691
AT2G25870			haloacid dehalogenase-like hyd...		Lus10005489 [exp]	12.1	0.8728
AT2G39930		ATISA1, ISA1	ARABIDOPSIS THALIANA ISOAMYLAS...		Lus10017149 [exp]	12.8	0.8588

Compare expression of checked genes

Lus10016125 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.