Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28080 551 / 0 UDP-Glycosyltransferase superfamily protein (.1) AT2G36970 545 / 0 UDP-Glycosyltransferase superfamily protein (.1) AT1G22400 275 / 5e-87 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G78270 268 / 3e-84 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT1G22380 264 / 1e-82 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G22340 262 / 8e-82 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT1G22360 253 / 1e-78 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G22370 244 / 4e-75 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2) AT3G02100 233 / 3e-71 UDP-Glycosyltransferase superfamily protein (.1) AT1G05675 223 / 2e-67 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021437 [exp] 808 / 0 AT2G36970 530 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10016128 [exp] 801 / 0 AT2G36970 558 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10021438 [exp] 796 / 0 AT2G36970 534 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10016127 [exp] 619 / 0 AT2G36970 426 / 2e-147 UDP-Glycosyltransferase superfamily protein (.1) Lus10013925 [exp] 269 / 1e-84 AT1G22380 560 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10024583 [exp] 269 / 2e-84 AT1G22380 598 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10017542 [exp] 267 / 2e-83 AT1G22400 499 / 4e-174 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10010665 [exp] 265 / 5e-83 AT1G22400 516 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10032220 [exp] 259 / 8e-81 AT1G22380 601 / 0.0 UDP-glucosyl transferase 85A3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G008100 [exp] 656 / 0 AT2G28080 622 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.004G214100 [exp] 567 / 0 AT2G28080 545 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.016G022500 [exp] 262 / 4e-82 AT1G22340 535 / 0.0 UDP-glucosyl transferase 85A7 (.1) Potri.006G023700 [exp] 261 / 7e-82 AT1G22370 476 / 2e-165 UDP-glucosyl transferase 85A5 (.1.2) Potri.005G073766 [exp] 256 / 1e-79 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.005G073800 [exp] 256 / 1e-79 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.016G021000 [exp] 254 / 6e-79 AT1G22360 561 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.006G023101 [exp] 251 / 5e-78 AT1G22360 516 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.001G312600 [exp] 251 / 6e-78 AT1G22360 586 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.006G022300 [exp] 251 / 6e-78 AT1G22360 518 / 0.0 UDP-glucosyl transferase 85A2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10016126 pacid=23171821 polypeptide=Lus10016126 locus=Lus10016126.g ID=Lus10016126.BGIv1.0 annot-version=v1.0 ATGGCGGAGGAAACACACGGCGGCGGCGGTGTCCGCCGCCATCAGAAGCCACACGCCATCGTCGTCCCTTTCCCGCTTCAAGGCCATGTCATCCCGGCCG TCTACCTCGCCATCAAGCTCGCCTCCCAAGGTTTCACTATCACCTATGTCAACACCCACTACATCCACCACAAGACCTCCTCGTCAGCCGCCGCCACTGG AGACGACTTTTTTGCCGGCGTCCGGGAATCGGGGTTGGACATAAGGTACAAAACCATTTCGGATGGGAAACCGCTTGGGTTCGACCGATCGTTAAACCAT GACGAATTCTTGGCTTCGATTATGCACGTGTTCCCTGCCAACGTGGAGGAGTTGGTCGCCGGAATGGTCGCCGCCGGTGAGAAAGAGGAGGAGGGGAAGG TTAGTTGTTTGGTGGCCGACACTTTCTTTGTATGGCCGTCGAAGGTTGCCAAGAAGTTTGGGTTGGTTTACGTTTCGGTTTGGACTCAACCGGCTTTGGT TTTCACCTTGTACCATCATGTCCACCTTCTCCGTCAAAATGGCCACTTCGGTTGTCGAGATCGAAGGAAAGACACAATAGACTATGTACCAGGAGTAAAA AGAATTGAACCAAAAGATACTCCATCACCTCTTCAAGAGGATGATGAGACCACCATTGTCCACCAAACAACATTAGGCGCATTCCATGATGTCAGAAGCG CGGACTTTGTACTAATTAACACGATCCAAGAGCTCGAACAAGACACGATTTCGGGTTTAGAACATGTCCATGAAGCTCAAGTCTACGCTATTGGACCTAT TTTCCCACGTGGGTTCACTACAAAGCCAATCAGTATGAGCTTGTGGTCTGAGTCGGATTGCACCCAGTGGTTAAACTCCAAGCCACCTGGCTCGGTCCTC TATGTGTCATTCGGAAGCTATGCGCATGTGGCTAAACCCGACCTCGTGGAGATAGCGTATGGGCTGGCTCTTAGTGGGATAAGTTTTCTTTGGGTGTTAC GTGATGATATTGTGAGCTCAGATGATCCAGATCCATTACCCGTTGGATTCAAGGAAGAGGTTTCCGACCGTGCGATGATTGTTGGGTGGTGTAGTCAAAA GGAAGTCTTGGACCATGAGGCGATTGGAGGGTTCCTAACACACTGCGGGTGGAACTCAGTGCTTGAGAGTATATGGTGTGGAGTTCCAATGATATGTTTC CCTTTGTTTGTGGATCAGTTCACGAATCGAAAACTAATGGTGGACGACTGGAAGGTCGGGATCAACTTGGTTGATCGGGCGGTTGTGACGAAAGAGGAGG TATCGGAGAATGTCAATCATTTAATGGTTGGAAAATCAAGAAACGAGTTAAAGGAAAAAATCAACGAGGTAAAGAAAATCTTGGTTTGGGCACTCGAGCC TAGTGGATCGTCTGAGCAAAATTTCATCCGATTCATTGGAGAACTCAAGGACAAAATTATATAA
AA sequence Show only first row Show all	>Lus10016126 pacid=23171821 polypeptide=Lus10016126 locus=Lus10016126.g ID=Lus10016126.BGIv1.0 annot-version=v1.0 MAEETHGGGGVRRHQKPHAIVVPFPLQGHVIPAVYLAIKLASQGFTITYVNTHYIHHKTSSSAAATGDDFFAGVRESGLDIRYKTISDGKPLGFDRSLNH DEFLASIMHVFPANVEELVAGMVAAGEKEEEGKVSCLVADTFFVWPSKVAKKFGLVYVSVWTQPALVFTLYHHVHLLRQNGHFGCRDRRKDTIDYVPGVK RIEPKDTPSPLQEDDETTIVHQTTLGAFHDVRSADFVLINTIQELEQDTISGLEHVHEAQVYAIGPIFPRGFTTKPISMSLWSESDCTQWLNSKPPGSVL YVSFGSYAHVAKPDLVEIAYGLALSGISFLWVLRDDIVSSDDPDPLPVGFKEEVSDRAMIVGWCSQKEVLDHEAIGGFLTHCGWNSVLESIWCGVPMICF PLFVDQFTNRKLMVDDWKVGINLVDRAVVTKEEVSENVNHLMVGKSRNELKEKINEVKKILVWALEPSGSSEQNFIRFIGELKDKII

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28080			UDP-Glycosyltransferase superf...		Lus10016126 [exp]	0	1
AT3G47160			RING/U-box superfamily protein...		Lus10036934 [exp]	7.1	0.9114
AT2G19330		PIRL6	plant intracellular ras group-...		Lus10003229 [exp]	14.5	0.8811
AT4G28540		CKL6, PAPK1	casein kinase I-like 6 (.1)		Lus10022908 [exp]	16.6	0.9071
AT5G03455		ACR2, ARATH;CDC...	ARSENATE REDUCTASE 2, Rhodanes...		Lus10022616 [exp]	26.6	0.9040
AT5G36930			Disease resistance protein (TI...		Lus10000153 [exp]	29.1	0.8663
AT5G23050		AAE17	acyl-activating enzyme 17 (.1)		Lus10038966 [exp]	30.2	0.9013
AT4G16520		ATG8F	autophagy 8f, Ubiquitin-like s...		Lus10008507 [exp]	34.5	0.8959
AT2G10950			BSD domain-containing protein ...		Lus10027706 [exp]	37.4	0.9012
AT4G28240			Wound-responsive family protei...		Lus10039758 [exp]	38.0	0.9021
AT2G24550			unknown protein		Lus10026939 [exp]	43.7	0.9007

Compare expression of checked genes

Lus10016126 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.