Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36970 406 / 2e-139 UDP-Glycosyltransferase superfamily protein (.1) AT2G28080 399 / 7e-137 UDP-Glycosyltransferase superfamily protein (.1) AT2G30140 211 / 5e-64 UDP-Glycosyltransferase superfamily protein (.1.2) AT1G22400 201 / 9e-60 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G78270 197 / 2e-58 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT1G22380 194 / 2e-57 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G05560 191 / 5e-56 UGT75B1, UGT1 UDP-GLUCOSE TRANSFERASE 1, UDP-glucosyltransferase 75B1 (.1) AT1G22360 189 / 2e-55 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G22340 183 / 4e-53 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT1G05530 182 / 4e-53 UGT75B2, UGT2 UDP-GLUCOSYL TRANSFERASE 2, UDP-glucosyl transferase 75B2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021438 [exp] 628 / 0 AT2G36970 534 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10016126 [exp] 594 / 0 AT2G28080 551 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10021437 [exp] 587 / 0 AT2G36970 530 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10016128 [exp] 585 / 0 AT2G36970 558 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10042260 [exp] 205 / 5e-61 AT2G30140 410 / 3e-139 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10013925 [exp] 204 / 5e-61 AT1G22380 560 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10017542 [exp] 199 / 5e-59 AT1G22400 499 / 4e-174 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10042262 [exp] 192 / 3e-57 AT2G30150 375 / 2e-127 UDP-Glycosyltransferase superfamily protein (.1) Lus10010665 [exp] 192 / 2e-56 AT1G22400 516 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G008100 [exp] 482 / 2e-169 AT2G28080 622 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.004G214100 [exp] 470 / 8e-165 AT2G28080 545 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G281900 [exp] 217 / 2e-66 AT2G30140 478 / 6e-167 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.001G281800 [exp] 204 / 3e-61 AT2G30150 467 / 5e-163 UDP-Glycosyltransferase superfamily protein (.1) Potri.004G179300 [exp] 201 / 4e-60 AT1G05680 446 / 1e-154 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.007G140300 [exp] 199 / 3e-59 AT1G05680 457 / 4e-159 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.016G022500 [exp] 197 / 3e-58 AT1G22340 535 / 0.0 UDP-glucosyl transferase 85A7 (.1) Potri.002G236400 [exp] 195 / 1e-57 AT1G05560 442 / 1e-152 UDP-GLUCOSE TRANSFERASE 1, UDP-glucosyltransferase 75B1 (.1) Potri.017G032300 [exp] 193 / 4e-57 AT1G05675 465 / 6e-162 UDP-Glycosyltransferase superfamily protein (.1) Potri.006G023700 [exp] 192 / 1e-56 AT1G22370 476 / 2e-165 UDP-glucosyl transferase 85A5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10016127 pacid=23171789 polypeptide=Lus10016127 locus=Lus10016127.g ID=Lus10016127.BGIv1.0 annot-version=v1.0 ATGTTCCACGTGTTCTCTGCCCATGTGGAAGAGTTGGTCGCCGGGATGGTTGCCGCCGGTAAGGAGGAGAAGGTTAGTTGTTTGGTGGCCGACACTTTCT TCGTGTGGCCGTCCAAGGTTGCCAAGAAGTTCGGCTTGGTTTTCGTTTCGATTTGGACCCAACCGGCTTTGGTTTTCACTTTGTACCATCATGTCCACCT TCTTCGCCGGAATTGCCACTTCGGTTGTCAAGATAGAAGAGAGGATGCGATAGAGTATATTCCAGGAGTAAAAAGAATCGAACCAAAAGACATGCCTTCA ATTCTTCAAGAGGTCGATGAGAACGTCGAAAAGACAGCTTTCGTCGCGTTTAGAGATGTTAGGTATGCGGATTTTATACTAGCAAACACGGTTCAAGAGC TTGAACATGACACGATCTCAGGTCTAAAACAGGCACACAAAGCGCAATTTTATTCTATCGGGCCTATCTTCCCACCCGAGTTCACGACAAGCTCGATAAG CACTAGCTTGTGGTCGGAATCGGACTGCACTGAGTGGTTAAACTCTAAGCCAAGTGGCTCGGTGCTCTATGTGTCATTCGGGAGCTACGCCCACGTGACT AAATCCGACCTCGTGGAGATAGCACGTGGGATAGCCCTTAGTGGAGTAAGTTTTCTTTGGGTGTTACGTGATGATATCGTGAGTTCGAATGATCCGGATC CTTTAATTGCTGGATTCCGAGAAGAGGTTTCAGATCGGGCGATGATTGTCGGGTGGTGTAATCAAAAGGAAGTTCTAGCCCATACGGCGATAGGAGGGTT CCTAACTCACTGTGGGTGGAACTCGGTGCTCGAGAGCACGTGGTGTGGAGTGTCAATGTTGTGTTTTCCTCTGTTTGTGGATCAGTTCACGAATCGAAAA TTAGTGATGGATGATTGGAAAGTTGGGATTAACCTTGTTGATCGGGCGATTGTGACAAAAGAAGAAGTATTGAAGAACGTTAGCCGTTTGATGGTTGGAA AAACAAGAGACGAGTTACAGGAAAAGATCAAAGTGGTGAAAAAAATCTTGGTGGATGCACTGGAGCCTAGTGGATCCTCCGAGCAGAATTTGGCCCGATT CGTTAGAGAACTCAAGGACACAATTTTATATAGAAACCAATGA
AA sequence Show only first row Show all	>Lus10016127 pacid=23171789 polypeptide=Lus10016127 locus=Lus10016127.g ID=Lus10016127.BGIv1.0 annot-version=v1.0 MFHVFSAHVEELVAGMVAAGKEEKVSCLVADTFFVWPSKVAKKFGLVFVSIWTQPALVFTLYHHVHLLRRNCHFGCQDRREDAIEYIPGVKRIEPKDMPS ILQEVDENVEKTAFVAFRDVRYADFILANTVQELEHDTISGLKQAHKAQFYSIGPIFPPEFTTSSISTSLWSESDCTEWLNSKPSGSVLYVSFGSYAHVT KSDLVEIARGIALSGVSFLWVLRDDIVSSNDPDPLIAGFREEVSDRAMIVGWCNQKEVLAHTAIGGFLTHCGWNSVLESTWCGVSMLCFPLFVDQFTNRK LVMDDWKVGINLVDRAIVTKEEVLKNVSRLMVGKTRDELQEKIKVVKKILVDALEPSGSSEQNLARFVRELKDTILYRNQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36970			UDP-Glycosyltransferase superf...		Lus10016127 [exp]	0	1
AT5G63380			AMP-dependent synthetase and l...		Lus10036994 [exp]	1.7	0.8786
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10017601 [exp]	2.2	0.9080
AT2G38900			Serine protease inhibitor, pot...		Lus10035626 [exp]	3.7	0.8983
AT4G15920		SWEET17, AtSWEE...	Nodulin MtN3 family protein (....		Lus10001475 [exp]	4.0	0.8585
AT4G05220			Late embryogenesis abundant (L...		Lus10020066 [exp]	8.4	0.8579
AT3G20870		ZTP29	zinc transporter 29, ZIP metal...		Lus10031268 [exp]	11.0	0.8430
AT5G02510			unknown protein		Lus10025332 [exp]	11.4	0.8240
AT4G37560			Acetamidase/Formamidase family...		Lus10011528 [exp]	12.6	0.8763
AT1G60800		NIK3	NSP-interacting kinase 3 (.1)		Lus10030591 [exp]	17.3	0.8011
AT3G07530			unknown protein		Lus10040483 [exp]	18.8	0.8512

Compare expression of checked genes

Lus10016127 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.