Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36970 541 / 0 UDP-Glycosyltransferase superfamily protein (.1) AT2G28080 534 / 0 UDP-Glycosyltransferase superfamily protein (.1) AT1G22400 260 / 4e-81 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G22340 256 / 8e-80 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT1G22360 254 / 4e-79 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G78270 254 / 7e-79 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT1G22380 251 / 1e-77 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G22370 241 / 5e-74 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2) AT3G02100 216 / 1e-64 UDP-Glycosyltransferase superfamily protein (.1) AT4G15480 212 / 7e-63 UGT84A1 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016126 [exp] 773 / 0 AT2G28080 551 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10021437 [exp] 749 / 0 AT2G36970 530 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10021438 [exp] 739 / 0 AT2G36970 534 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10016127 [exp] 581 / 0 AT2G36970 426 / 2e-147 UDP-Glycosyltransferase superfamily protein (.1) Lus10013925 [exp] 262 / 6e-82 AT1G22380 560 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10017542 [exp] 260 / 6e-81 AT1G22400 499 / 4e-174 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10024584 [exp] 256 / 8e-80 AT1G22400 570 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10024583 [exp] 253 / 3e-78 AT1G22380 598 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10032220 [exp] 253 / 4e-78 AT1G22380 601 / 0.0 UDP-glucosyl transferase 85A3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G008100 [exp] 642 / 0 AT2G28080 622 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.004G214100 [exp] 556 / 0 AT2G28080 545 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.016G022500 [exp] 266 / 2e-83 AT1G22340 535 / 0.0 UDP-glucosyl transferase 85A7 (.1) Potri.006G023700 [exp] 256 / 1e-79 AT1G22370 476 / 2e-165 UDP-glucosyl transferase 85A5 (.1.2) Potri.005G073766 [exp] 253 / 1e-78 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.005G073800 [exp] 253 / 1e-78 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.016G021000 [exp] 253 / 2e-78 AT1G22360 561 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.007G095000 [exp] 250 / 2e-77 AT1G22340 543 / 0.0 UDP-glucosyl transferase 85A7 (.1) Potri.016G021500 [exp] 247 / 3e-76 AT1G22360 501 / 3e-175 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052000 [exp] 246 / 5e-76 AT1G22360 617 / 0.0 UDP-glucosyl transferase 85A2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10016128 pacid=23171859 polypeptide=Lus10016128 locus=Lus10016128.g ID=Lus10016128.BGIv1.0 annot-version=v1.0 ATGGCGGAGGAGACACAAATCGACGGCGGCCACCGCGGCTCGAAGCCACACGCCATCCTTGTCCCTTACCCACTCCAAGGCCACATCATCCCCGCCGTCC ACCTAGCCATCAAGCTCGCCTCCCAAGGTTTCACTATCACCTTCATCAACACCGAATACATCCACCACAAGACCTCCTCCGCCGCTGCCGGGGGCGGCGA CGACGTGTTCTCCGGCGTTCGGGACTCGGGGCTGGATATAAGGTACAAAACCGTTTCGGATGGGAAGCCAGTCGGGTTCGACCGGTCTTTGAACCACGAC GAGTTCATGGCGTCCATTTTGCACGTGCTCCCCGGCAACGTGGAGGAAGTCATTGCGGGGATTGTTTCCGCCGGCGAGGAGGAGGATGAGGAGGTTAGCT GTTTGGTGGCCGACACGTTTTTTGTGTGGCCGTCGAAGGTTGCGAAGAAGTTTGGGTTGGTTTATGTTTCGGTTTGGACTGAACCGATTTTGGTTTACAC GTTGTATCATCATGTCCACCTTCTTCGACAAAATGGCCACTACGGTTGTAAAGATAGAAGGAAGGACGCTATAGATTACATACCGGGGGTGAAAAGAATC GAACCGAAGGATACAATGTCGTTTCTTCAAGAAGCCGATGAGAACACCATTATCCACCAAATAATCTTCCCAGCTTTCCAAGATGCAAGGGGTGCGGATT TCATACTAGCAAATACGGTCCAAGAGCTTGAACAAGACACAATATCGGGTCTAAAACAGGCCCACAAGGGCCAAGTCTACTCTATCGGGCCCATTTTCCC ACCACGATTTACCAAAAGCTCAGTCAGCACGAGCCTATGGGCCGAGTCCGATTGCACCAAGTGGCTAAATACCAAACCACCCGGCTCGGTTTTGTATGTG TCGTTTGGGAGCTACGCTCACGTGACCAAAGCTGACCTAGTGGAGATAGCACATGGGCTCGCTCTTAGTAAGGTGAGTTTTATTTGGGTGTTGCGTGATG ATATAGTGAGTGCGGACGATCCAAACCCTTTACCTGTTGGATTCAAGGAAGAGATTTCTGATCGTGCAATGATCGTGGGGTGGTGCAATCAAAAGGAAGT CCTTTCTCATACAGCAATCGGAGGGTTCCTGACGCATTGCGGATGGAATTCAGTGCTTGAGAGCACATGGTGTGGAGTGCCGATGGTTTGTTTTCCTTTG TACACAGATCAATTCACGAACCGTAAGTTGGTGGTAGATGATTGGAAGATCGGGATTAACTTAATCAATCACACGGTTGTGACAAAAGAGGATGTGGCTG AAAATATCAACCACTTGATGGATGGCAAATCGAGAGAAAGGATCAAGGAAAAAGTCAAGGAGGTGAACAAAATCTTGGTGGGTGCAATTGAGCCTAACGG ATCGTCCGAACGAAATTTCACCCGATTCGTTCGAGAACTCGAGGACAACATTACACAATTGAGCAAGTGA
AA sequence Show only first row Show all	>Lus10016128 pacid=23171859 polypeptide=Lus10016128 locus=Lus10016128.g ID=Lus10016128.BGIv1.0 annot-version=v1.0 MAEETQIDGGHRGSKPHAILVPYPLQGHIIPAVHLAIKLASQGFTITFINTEYIHHKTSSAAAGGGDDVFSGVRDSGLDIRYKTVSDGKPVGFDRSLNHD EFMASILHVLPGNVEEVIAGIVSAGEEEDEEVSCLVADTFFVWPSKVAKKFGLVYVSVWTEPILVYTLYHHVHLLRQNGHYGCKDRRKDAIDYIPGVKRI EPKDTMSFLQEADENTIIHQIIFPAFQDARGADFILANTVQELEQDTISGLKQAHKGQVYSIGPIFPPRFTKSSVSTSLWAESDCTKWLNTKPPGSVLYV SFGSYAHVTKADLVEIAHGLALSKVSFIWVLRDDIVSADDPNPLPVGFKEEISDRAMIVGWCNQKEVLSHTAIGGFLTHCGWNSVLESTWCGVPMVCFPL YTDQFTNRKLVVDDWKIGINLINHTVVTKEDVAENINHLMDGKSRERIKEKVKEVNKILVGAIEPNGSSERNFTRFVRELEDNITQLSK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36970			UDP-Glycosyltransferase superf...		Lus10016128 [exp]	0	1
AT1G09310			Protein of unknown function, D...		Lus10010904 [exp]	1.4	0.9429
AT4G35780		STY17	serine/threonine/tyrosine kina...		Lus10026461 [exp]	2.0	0.9294
AT1G08810	MYB	ATMYB60	myb domain protein 60 (.1.2)		Lus10020343 [exp]	2.4	0.9283
AT5G23210		SCPL34	serine carboxypeptidase-like 3...		Lus10017391 [exp]	4.9	0.8711
AT5G41050			Pollen Ole e 1 allergen and ex...		Lus10035187 [exp]	5.0	0.9081
AT1G68260			Thioesterase superfamily prote...		Lus10031948 [exp]	6.3	0.9125
AT4G39330		AtCAD1, ATCAD9	cinnamyl alcohol dehydrogenase...		Lus10000143 [exp]	13.5	0.8671
AT2G21280		GC1, ATSULA	GIANT CHLOROPLAST 1, NAD(P)-bi...		Lus10042051 [exp]	15.9	0.8812
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10037640 [exp]	16.3	0.8541
AT1G09310			Protein of unknown function, D...		Lus10031428 [exp]	17.3	0.9073

Compare expression of checked genes

Lus10016128 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.