Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28085 115 / 8e-34 SAUR-like auxin-responsive protein family (.1) AT3G09870 81 / 2e-20 SAUR-like auxin-responsive protein family (.1) AT4G38860 69 / 7e-16 SAUR-like auxin-responsive protein family (.1) AT4G34800 66 / 7e-15 SAUR-like auxin-responsive protein family (.1) AT2G21210 64 / 3e-14 SAUR-like auxin-responsive protein family (.1) AT4G34750 64 / 2e-13 SAUR-like auxin-responsive protein family (.1.2) AT4G34770 62 / 2e-13 SAUR-like auxin-responsive protein family (.1) AT4G34780 62 / 3e-13 SAUR-like auxin-responsive protein family (.1) AT2G46690 62 / 5e-13 SAUR-like auxin-responsive protein family (.1) AT3G20220 62 / 5e-13 SAUR-like auxin-responsive protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021436 [exp] 235 / 7e-81 AT2G28085 117 / 6e-35 SAUR-like auxin-responsive protein family (.1) Lus10021435 [exp] 199 / 1e-66 AT2G28085 108 / 4e-31 SAUR-like auxin-responsive protein family (.1) Lus10016130 [exp] 199 / 1e-66 AT2G28085 111 / 2e-32 SAUR-like auxin-responsive protein family (.1) Lus10001397 [exp] 81 / 2e-20 AT2G28085 69 / 8e-16 SAUR-like auxin-responsive protein family (.1) Lus10030263 [exp] 78 / 7e-19 AT3G09870 100 / 4e-28 SAUR-like auxin-responsive protein family (.1) Lus10004014 [exp] 75 / 6e-18 AT3G09870 101 / 1e-28 SAUR-like auxin-responsive protein family (.1) Lus10026532 [exp] 73 / 3e-17 AT3G09870 64 / 3e-14 SAUR-like auxin-responsive protein family (.1) Lus10013819 [exp] 73 / 4e-17 AT3G09870 92 / 7e-25 SAUR-like auxin-responsive protein family (.1) Lus10026531 [exp] 71 / 2e-16 AT3G09870 89 / 7e-24 SAUR-like auxin-responsive protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G226400 [exp] 106 / 2e-30 AT2G28085 51 / 3e-09 SAUR-like auxin-responsive protein family (.1) Potri.016G092400 [exp] 100 / 4e-28 AT3G09870 108 / 8e-32 SAUR-like auxin-responsive protein family (.1) Potri.006G125100 [exp] 93 / 5e-25 AT3G09870 103 / 2e-29 SAUR-like auxin-responsive protein family (.1) Potri.009G127400 [exp] 70 / 3e-16 AT4G34770 111 / 3e-33 SAUR-like auxin-responsive protein family (.1) Potri.009G127600 [exp] 66 / 1e-14 AT5G18080 116 / 7e-35 small auxin up RNA 24, SAUR-like auxin-responsive protein family (.1) Potri.009G127700 [exp] 65 / 1e-14 AT5G18080 114 / 1e-34 small auxin up RNA 24, SAUR-like auxin-responsive protein family (.1) Potri.009G127500 [exp] 63 / 1e-13 AT2G21210 128 / 5e-40 SAUR-like auxin-responsive protein family (.1) Potri.004G165300 [exp] 63 / 1e-13 AT4G38840 130 / 6e-41 SAUR-like auxin-responsive protein family (.1) Potri.004G164400 [exp] 63 / 1e-13 AT4G34760 182 / 4e-61 SAUR-like auxin-responsive protein family (.1) Potri.009G126900 [exp] 63 / 1e-13 AT4G38840 131 / 1e-41 SAUR-like auxin-responsive protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02519 [flax] [poplar] Auxin_inducible Auxin responsive protein
Representative CDS sequence Show only first row Show all	>Lus10016129 pacid=23171856 polypeptide=Lus10016129 locus=Lus10016129.g ID=Lus10016129.BGIv1.0 annot-version=v1.0 ATGGCTCCTACTACTAGCAAGAACAAGGGAAGTGGAGGCATAATCAAGCTCAAGATAGTTGCAAAGAAGCTCCAAAAGAGCCTCAATTCCTTGGGGATCA AGAAGGAAAACAATATCCCTGGGGACGTTAAAGAAGGCCACTTTGCGGTTTTAGCTGTGGAAGGAGTTGAAGAGCCTCAGAGGTTCGTGGTGCCTTTGAC TTATCTCACTCACCCTACATTTCTGAGGCTCTTGGAGCAGGCTGCAGAAGAGTATGGGTTTGAAGGGCGCGAGGGCGCTCTTGCTGTCCCTTGTAGGCCT TCGGAGCTCGAGAGGATCTTGTCGGAGCAATGGGAAAAAAGTATTGAGTCGTCAAGGGGAAGGATGATGAACAATGGTGGTGGTGGTAGTGATAGTTGGG GTTCTTCCCCTTGTAAGACTATGGTGTCAAGCTTTTGA
AA sequence Show only first row Show all	>Lus10016129 pacid=23171856 polypeptide=Lus10016129 locus=Lus10016129.g ID=Lus10016129.BGIv1.0 annot-version=v1.0 MAPTTSKNKGSGGIIKLKIVAKKLQKSLNSLGIKKENNIPGDVKEGHFAVLAVEGVEEPQRFVVPLTYLTHPTFLRLLEQAAEEYGFEGREGALAVPCRP SELERILSEQWEKSIESSRGRMMNNGGGGSDSWGSSPCKTMVSSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28085			SAUR-like auxin-responsive pro...		Lus10016129 [exp]	0	1
AT4G38840			SAUR-like auxin-responsive pro...		Lus10038191 [exp]	1.0	0.9416
AT5G10770			Eukaryotic aspartyl protease f...		Lus10026243 [exp]	1.7	0.8608
AT2G28085			SAUR-like auxin-responsive pro...		Lus10021436 [exp]	3.5	0.8826
AT1G80760		NLM7, NIP6;1	NOD26-like intrinsic protein 6...		Lus10041674 [exp]	3.9	0.8590
AT5G62280			Protein of unknown function (D...		Lus10031701 [exp]	13.2	0.8476
AT2G47770		ATTSPO	TSPO(outer membrane tryptophan...		Lus10010281 [exp]	13.9	0.8500
AT2G40610		ATHEXPALPHA1.11...	expansin A8 (.1)		Lus10029038 [exp]	14.3	0.8206
AT5G62360			Plant invertase/pectin methyle...		Lus10038915 [exp]	18.5	0.8190
AT1G08350			Endomembrane protein 70 protei...		Lus10020613 [exp]	18.9	0.8598
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Lus10030156 [exp]	23.9	0.8381

Compare expression of checked genes

Lus10016129 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.