Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19910 240 / 1e-79 MED31 SOH1 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021434 [exp] 340 / 8e-119 AT5G19910 251 / 1e-85 SOH1 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G113400 [exp] 268 / 2e-90 AT5G19910 239 / 6e-81 SOH1 family protein (.1.2) Potri.015G110900 [exp] 266 / 9e-90 AT5G19910 230 / 2e-77 SOH1 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05669 [flax] [poplar] Med31 SOH1
Representative CDS sequence Show only first row Show all	>Lus10016131 pacid=23171849 polypeptide=Lus10016131 locus=Lus10016131.g ID=Lus10016131.BGIv1.0 annot-version=v1.0 ATGGGCCATTTTCAAAAAGCCTATTGGGCTTCATTCCGCCACGTGTATTCCTTGCCTTCTGTCATTTTTCTCGTCCTCCTCCTTTTCCAATCAAGTGAGC AAAGCCAGACTCTCCAGCCACCGGCGATCGATACAGCGTCACCGAATCCTTCGCCGTCCACCTTCAAAGCTCCACAACCAAACAAGATTTCTACTACCAG CGCCGATTACCGTCCGCCGTTGTTTCTCTCCTTTCTGCGCTACCATCGCTTTACCCTAGCTATCACACTATCCTCCCTCGCTGTTTTCGCGTTCCGACCG CCGCCGTCGCTCCCAGTCCTCAGTCCAGCAGCTCGTTGCTCCATTGAAACTGAGAACGTATCAGCTTCTCCGTCTTCGCCTAAGAAGGTATATAAGGATC CGGATGATGGACGCCAGAGGTTTCTTCTCGAGTTGGAGTTCGTACAATGTCTTGCTAATCCAACTTACATTCACTACCTAGCTCAGAACCGTTATTTCGA AGACGAAGCATTCATCGGCTACTTAAAATACCTCCAGTATTGGCAGCAACCAGAGTACATCAAGTTCATAATGTATCCTCACTGCTTATTCTTCCTAGAA CTGCTTCAAAACGTAAACTTCCGCAACGCAATGGCTCACCCTGGCAACAAGGAATTGGCACACAGGCAACAGTTCTACTACTGGAAGAACTACAGGAACA ATCGGCTGAAGCACATTCTGCCAAGGCCACTTCCCGAGCCCACGGCAGCAGCAGCAACTCCTGCTTCTGCCCCTCCTCTGCCTCCCCCGCCTTCGGCCAT ACCTACTAGCCACGGTTCGACTATGAGTATGCCAGTTCCTTCAACACATTCTCCAATGCCGTATGGAATGAACCCTGGATCGGGCCTCGGGAGGAACGAG ATGAGGAATGCGGGCATGGATCGTCGGAAGAGGAAGTAA
AA sequence Show only first row Show all	>Lus10016131 pacid=23171849 polypeptide=Lus10016131 locus=Lus10016131.g ID=Lus10016131.BGIv1.0 annot-version=v1.0 MGHFQKAYWASFRHVYSLPSVIFLVLLLFQSSEQSQTLQPPAIDTASPNPSPSTFKAPQPNKISTTSADYRPPLFLSFLRYHRFTLAITLSSLAVFAFRP PPSLPVLSPAARCSIETENVSASPSSPKKVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQQPEYIKFIMYPHCLFFLE LLQNVNFRNAMAHPGNKELAHRQQFYYWKNYRNNRLKHILPRPLPEPTAAAATPASAPPLPPPPSAIPTSHGSTMSMPVPSTHSPMPYGMNPGSGLGRNE MRNAGMDRRKRK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19910		MED31	SOH1 family protein (.1.2)		Lus10016131 [exp]	0	1
AT5G09310			unknown protein		Lus10037415 [exp]	2.0	0.9241
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Lus10040207 [exp]	3.0	0.9297
AT3G12130	C3HZnF		KH domain-containing protein /...		Lus10012017 [exp]	3.9	0.9222
AT2G06210		VIP6, ELF8	VERNALIZATION INDEPENDENCE 6, ...		Lus10000472 [exp]	4.2	0.9026
AT3G02790	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10036432 [exp]	4.5	0.9177
AT5G27710			unknown protein		Lus10031519 [exp]	5.7	0.8843
AT1G68760		ATNUDX1, ATNUDT...	NUDIX HYDROLASE 1, ARABIDOPSIS...		Lus10034784 [exp]	5.7	0.9068
AT1G78310			VQ motif-containing protein (....		Lus10036480 [exp]	5.9	0.9170
AT5G49210			unknown protein		Lus10032604 [exp]	6.0	0.9114
AT1G20920			P-loop containing nucleoside t...		Lus10035327 [exp]	6.9	0.9018

Compare expression of checked genes

Lus10016131 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.