Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60800 135 / 4e-37 Heavy metal transport/detoxification superfamily protein (.1.2) AT2G28090 102 / 5e-25 Heavy metal transport/detoxification superfamily protein (.1) AT5G03380 103 / 1e-24 Heavy metal transport/detoxification superfamily protein (.1.2) AT2G36950 99 / 7e-23 Heavy metal transport/detoxification superfamily protein (.1) AT3G02960 87 / 1e-19 Heavy metal transport/detoxification superfamily protein (.1) AT5G50740 74 / 9e-15 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) AT1G29000 66 / 8e-12 Heavy metal transport/detoxification superfamily protein (.1) AT5G24580 60 / 9e-10 Heavy metal transport/detoxification superfamily protein (.1.2.3) AT4G38580 53 / 3e-08 HIPP26, ATFP6 HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26, farnesylated protein 6 (.1) AT5G63530 54 / 7e-08 ATFP3 ARABIDOPSIS THALIANA FARNESYLATED PROTEIN 3, farnesylated protein 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021432 [exp] 244 / 8e-79 AT5G60800 158 / 1e-46 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10014421 [exp] 114 / 4e-28 AT5G03380 193 / 5e-57 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10021516 [exp] 109 / 2e-26 AT5G03380 202 / 2e-61 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10022617 [exp] 108 / 5e-26 AT2G36950 178 / 2e-51 Heavy metal transport/detoxification superfamily protein (.1) Lus10039074 [exp] 84 / 2e-18 AT5G50740 182 / 8e-57 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Lus10038785 [exp] 84 / 2e-18 AT5G50740 183 / 6e-57 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Lus10032245 [exp] 79 / 5e-18 AT2G36950 79 / 2e-18 Heavy metal transport/detoxification superfamily protein (.1) Lus10023924 [exp] 77 / 2e-15 AT5G03380 180 / 6e-54 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10012867 [exp] 71 / 6e-13 AT2G40770 1843 / 0.0 zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G214700 [exp] 176 / 6e-52 AT5G60800 142 / 7e-40 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.009G007600 [exp] 159 / 2e-45 AT5G60800 157 / 1e-45 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G124800 [exp] 105 / 2e-25 AT2G36950 135 / 2e-36 Heavy metal transport/detoxification superfamily protein (.1) Potri.016G093100 [exp] 105 / 2e-25 AT2G36950 123 / 5e-32 Heavy metal transport/detoxification superfamily protein (.1) Potri.016G017600 [exp] 80 / 2e-17 AT3G02960 199 / 2e-64 Heavy metal transport/detoxification superfamily protein (.1) Potri.016G006600 [exp] 81 / 5e-17 AT5G50740 153 / 5e-45 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Potri.006G006100 [exp] 71 / 1e-13 AT5G50740 143 / 2e-41 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Potri.015G099500 [exp] 69 / 1e-12 AT5G50740 214 / 7e-68 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Potri.012G101400 [exp] 68 / 2e-12 AT5G63530 204 / 2e-63 ARABIDOPSIS THALIANA FARNESYLATED PROTEIN 3, farnesylated protein 3 (.1.2) Potri.012G007300 [exp] 63 / 9e-11 AT5G24580 251 / 5e-82 Heavy metal transport/detoxification superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [flax] [poplar] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Lus10016133 pacid=23171809 polypeptide=Lus10016133 locus=Lus10016133.g ID=Lus10016133.BGIv1.0 annot-version=v1.0 ATGGCCAAGAAGAAGAACAAGAATGGTGGAGGCGGCGGCGGCGGCAACCAGAACCAAAATCAGACCCAGAACCAGGAACCGACTCAGAAGGCTGACGGCG GAGAGAAAGTGAAGGATGTTGTTGCGGAGGTGGAGGAGAAGAAAGGTGGCGGCGGCGGAGGCGGTGGTGGTGGGGAGAAGAAGAAGCAGGAGAAGCAACT GTTGACGGTTGTCCTGAAAGTTGAAATGCATTGCGAAGGCTGCGCTTCCAAGATCATCCGACTCACCCGCGGATTCGACGGGGTGGAGTCGGTGAAGGCG GAGTCGGATTCTAACAAACTGACGGTAATCGGGAATGTAGATCCGGTGCAGATTCGTGACGAACTCCACGAGAAGACGAGGAAGAAGATCGAGCTAATCT CCCCTCAACCGAAGAAGGATGACAACAACAAGAACAACAACGACAGCGGAAAGAACAACGAGAAGAAATCCACCGGCGGCGATGGGGAGAAGAAGGCTGA CGGCGGGGGCGAGCAAAAGAAACCTAAAGAGACGCCGGTGACCACGGCGGTTCTCCAGCTGGGATTCCATTGCCAAGGGTGCATCGAGAAGATCCACAAG GTCGTTTCCAAGACCAAAGGGGTGCACGAGATAGTGGCGATGGACAAGGTGAAGGAGACGGTGACGGTGAAGGGGACAATGGACGTGAAGGCATTGGCGG AGGCGCTGAAGGAGAGGCTGAAGAGGCCGGTGGAGATTGTTCCGCCGCCGAAGAAAGAGAAGGATGCTGCCGGCGAAGATAAGGATAAGGAGAAGGAAGG GGAGAAGAACAACAACAATAACAACAACAACGGCGGTGGAAATGGTGGAGGAGGGAAGAAGAAGAAAGGCGGCGGTGGCGGGGATGGAGAAGGGCAAGGG CAGGAGAACGGCGGCGGAGGAGGATTGGAAGTTTCGAGAATGGAGTACATGGTCCAACCAGGGTTCGGTCCGGGGTTCGTGGGGCAGCCGGTTTACGGGA ATGGTTATTTCGGGCAGCCGGTTTACAATGGGAATGGGTACATTGGGCAGCCGGTTTACGAGTATGGGTATGGGCCGGTTCCTGGGTACCCGGTTCATAT GAAGTTTAACGACGAGAACCCGAATGCTTGCTCCGTTATGTAA
AA sequence Show only first row Show all	>Lus10016133 pacid=23171809 polypeptide=Lus10016133 locus=Lus10016133.g ID=Lus10016133.BGIv1.0 annot-version=v1.0 MAKKKNKNGGGGGGGNQNQNQTQNQEPTQKADGGEKVKDVVAEVEEKKGGGGGGGGGGEKKKQEKQLLTVVLKVEMHCEGCASKIIRLTRGFDGVESVKA ESDSNKLTVIGNVDPVQIRDELHEKTRKKIELISPQPKKDDNNKNNNDSGKNNEKKSTGGDGEKKADGGGEQKKPKETPVTTAVLQLGFHCQGCIEKIHK VVSKTKGVHEIVAMDKVKETVTVKGTMDVKALAEALKERLKRPVEIVPPPKKEKDAAGEDKDKEKEGEKNNNNNNNNGGGNGGGGKKKKGGGGGDGEGQG QENGGGGGLEVSRMEYMVQPGFGPGFVGQPVYGNGYFGQPVYNGNGYIGQPVYEYGYGPVPGYPVHMKFNDENPNACSVM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60800			Heavy metal transport/detoxifi...		Lus10016133 [exp]	0	1
AT5G60800			Heavy metal transport/detoxifi...		Lus10021432 [exp]	2.0	0.8702
AT3G07030			Alba DNA/RNA-binding protein (...		Lus10022807 [exp]	2.0	0.8469
AT5G67260		CYCD3;2	CYCLIN D3;2 (.1)		Lus10019317 [exp]	2.4	0.8254
AT3G24860	Trihelix		Homeodomain-like superfamily p...		Lus10022789 [exp]	3.9	0.8055
AT3G07030			Alba DNA/RNA-binding protein (...		Lus10011874 [exp]	6.9	0.7930
AT3G53540			unknown protein		Lus10025295 [exp]	7.1	0.7796
AT4G13270			Late embryogenesis abundant (L...		Lus10024264 [exp]	8.0	0.7824
AT1G16210			unknown protein		Lus10022649 [exp]	13.0	0.8092
AT4G13270			Late embryogenesis abundant (L...		Lus10023631 [exp]	16.3	0.7570
AT1G28360	AP2_ERF	AtERF12	ERF domain protein 12 (.1)		Lus10013993 [exp]	17.1	0.7655

Compare expression of checked genes

Lus10016133 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.