Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016134 pacid=23171855 polypeptide=Lus10016134 locus=Lus10016134.g ID=Lus10016134.BGIv1.0 annot-version=v1.0 ATGCCATTCTGGCTTCTCGGCCGAGTTGATAAAACACATGCGTTGGATGATTATCGGCCACAAAGTTTGAAGGTTAGGCTCAGCCCCTCGTCGGCGCCCG TTGAGACATCTCAGGCTTCAACTTCGTCAATAGCTTCATCTACGACGCTGGTATCTTCAATGGACATTCTACCGGGATTCGAATTCCAGGTGAGTCGGCT CGTGGCGCCTCACCCAGCTCCGTAA
AA sequence Show only first row Show all	>Lus10016134 pacid=23171855 polypeptide=Lus10016134 locus=Lus10016134.g ID=Lus10016134.BGIv1.0 annot-version=v1.0 MPFWLLGRVDKTHALDDYRPQSLKVRLSPSSAPVETSQASTSSIASSTTLVSSMDILPGFEFQVSRLVAPHPAP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10016134 [exp]	0	1
AT2G35740		ATINT3	nositol transporter 3 (.1)		Lus10017559 [exp]	1.4	0.9239
					Lus10024445 [exp]	3.7	0.9024
					Lus10021726 [exp]	5.9	0.8732
AT3G54200			Late embryogenesis abundant (L...		Lus10031555 [exp]	6.0	0.8869
AT5G55480		GPDL1, GDPDL4, ...	glycerophosphodiesterase-like ...		Lus10018042 [exp]	8.7	0.8892
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10040166 [exp]	11.0	0.8561
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10010960 [exp]	12.2	0.8611
					Lus10019165 [exp]	12.5	0.8845
AT4G34390		XLG2	extra-large GTP-binding protei...		Lus10009897 [exp]	13.3	0.8592
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006306 [exp]	14.3	0.8858

Compare expression of checked genes

Lus10016134 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.