Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05160 737 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G20510 421 / 7e-142 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT1G20500 391 / 2e-130 AMP-dependent synthetase and ligase family protein (.1) AT1G20480 388 / 8e-129 AMP-dependent synthetase and ligase family protein (.1) AT4G19010 387 / 2e-128 AMP-dependent synthetase and ligase family protein (.1) AT3G21240 383 / 5e-127 AT4CL2, 4CL2 4-coumarate:CoA ligase 2 (.1) AT1G65060 375 / 3e-124 4CL3 4-coumarate:CoA ligase 3 (.1.2) AT5G38120 375 / 5e-124 4CL8 AMP-dependent synthetase and ligase family protein (.1) AT5G63380 369 / 2e-121 AMP-dependent synthetase and ligase family protein (.1) AT1G51680 364 / 8e-120 AT4CL1, 4CL.1, 4CL1 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021431 [exp] 993 / 0 AT4G05160 803 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10013831 [exp] 617 / 0 AT4G05160 654 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10026544 [exp] 596 / 0 AT4G05160 642 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10015998 [exp] 408 / 2e-136 AT1G20510 833 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10012280 [exp] 410 / 4e-135 AT1G20510 825 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10037934 [exp] 395 / 2e-131 AT1G20510 462 / 2e-157 OPC-8:0 CoA ligase1 (.1.2) Lus10038667 [exp] 388 / 1e-128 AT1G20510 449 / 1e-152 OPC-8:0 CoA ligase1 (.1.2) Lus10026143 [exp] 380 / 3e-126 AT1G51680 838 / 0.0 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) Lus10015999 [exp] 369 / 2e-121 AT1G20510 692 / 0.0 OPC-8:0 CoA ligase1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G112800 [exp] 808 / 0 AT4G05160 852 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.004G102000 [exp] 793 / 0 AT4G05160 826 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.008G031500 [exp] 419 / 3e-141 AT1G20510 466 / 3e-159 OPC-8:0 CoA ligase1 (.1.2) Potri.002G012800 [exp] 419 / 4e-141 AT1G20510 769 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.010G230200 [exp] 419 / 6e-141 AT1G20510 478 / 7e-164 OPC-8:0 CoA ligase1 (.1.2) Potri.005G248500 [exp] 404 / 2e-135 AT1G20510 795 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.003G099700 [exp] 382 / 1e-126 AT4G19010 634 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.006G169700 [exp] 379 / 1e-125 AT3G21240 802 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.017G033600 [exp] 377 / 5e-125 AT5G63380 598 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.018G094200 [exp] 371 / 2e-122 AT3G21240 807 / 0.0 4-coumarate:CoA ligase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10016135 pacid=23171804 polypeptide=Lus10016135 locus=Lus10016135.g ID=Lus10016135.BGIv1.0 annot-version=v1.0 ATGGAGAAATCCGGCTACGGCCGCGACGGAATCTACCGATCCCTCCGACCAATTCTCTCCTTACCCAAAGACCCTAATCTCACCTTAGTCACTCACCTCT TCCGCAGATCCAAGTCTTCATCTTCTTCCCACAAACCAGCCCTCCACGACTCCGATTCATCCACCACCCTCTCATTCTCCGACCTCAAATCTTCCGTCGC CTCGTTCGCCGCCGGCCTCCGCCACTTAGGCATATCGAAAAACGATGTCGTATTGATATTCGCCCCCAATTCCTACCAATTCCCAATCTGCTTCCTCGCC ATCACTTCCTTCGGCGCAATCGCCACCACCGCCAACCCTCTCTACACCACCGCCGAGCTCGGCAAACAAATCAAAGACTCCAATCCCAAGCTCGTTATCA CCGTCCCTGATCTCTACCGGAAAGTTCAAAGCTTCAATCTTCCCGTGGTATTTCTAGGTCAGAATCCGGATGTTACCACCGTCGGGGAAGGGATCAAAAT CAGGACATTTCGTCAAATTGTTGAGATGGGTTCGTCGGAAACGGAGTTTACGACGAATGGTGTGAAGCAGACCGATACGGCGGCGCTTTTATACTCGTCG GGGACGACTGGATTGAGTAAAGGTGTGATCTTGACTCACCGGAACTTCATTGCGTCAGCGACGATGATCACAATGGATCAGGATTCTTCGGGGGAAGTTG ACAACGTGTTTTTATGTTTTCTGCCGATGTTTCATGTGTTTGGATTGGCGGTGATTACTTACGCGCAGTTGCAGAGAGGAAACTCGGTGGTGGTGATGGC GAAGTTTGAATTTGAATTGGTTTTAAAGGTTGTGGAGAAGTACAAGGTTACTCATATGTGGGTTGTTCCGCCGGTGATACTTGCTCTGGCGAAGGAGAAG TTGGTAAAGAAGTATGATTTGTCGTCGTTGAAGCAGATTGGATCTGGTGCTGCTCCTTTGGGGAAAGATTTGATGGTTGAATGTGCTAGGAAGTTTCCTC ATGCTGCTATTCTTCAGGGATATGGAATGACCGAAACTTGTTCCATCATTTCGGTCGAGAATCCAAGGGTAGGCCCTAGGAATTCCGGCTCAGCCGGAAC ACTCGTTGCAGGAGTCGAGAGCCAGATTATCAGCGTTGACACGATGAAGCCTCTTCCTCCGAATCAGCTAGGCGAGATTTGGGTTCGAGGACCCAACATG ATGCAAGGTTACTTCAACAATCCGGAGGCTACAAAGCAGACGATAGACAAGAAAGGATGGGTGCATACGGGAGACCTCGGGTACTTTGACGAGAAAGGTC AGCTACATGTCGTGGATCGGATCAAGGAACTCATTAAGTACAAAGGATTCCAGGTCGCGCCAGCTGAGCTCGAAGGGCTACTTGTTTCCCACCCAGAAAT ACTAGATGCAGTGGTCATCCCGTTTCCCGATGCTGAAGCTGGCGAAGTCCCCGCTGCTTACGTGGTTCGCGATATAAACAGCTCGCTGACTGAAGTTGAT GTCCAGAAGTTCATTGCTGATCAGGTTGCACCATTCAAGAGACTGAAGAGGGTGACATTCATCAACACTGTCCCTAAATCAGCTTCGGGGAAGATCCTCA GAAGAGAGCTTATTGACAAAGTAAAGTCGAAAATGTGA
AA sequence Show only first row Show all	>Lus10016135 pacid=23171804 polypeptide=Lus10016135 locus=Lus10016135.g ID=Lus10016135.BGIv1.0 annot-version=v1.0 MEKSGYGRDGIYRSLRPILSLPKDPNLTLVTHLFRRSKSSSSSHKPALHDSDSSTTLSFSDLKSSVASFAAGLRHLGISKNDVVLIFAPNSYQFPICFLA ITSFGAIATTANPLYTTAELGKQIKDSNPKLVITVPDLYRKVQSFNLPVVFLGQNPDVTTVGEGIKIRTFRQIVEMGSSETEFTTNGVKQTDTAALLYSS GTTGLSKGVILTHRNFIASATMITMDQDSSGEVDNVFLCFLPMFHVFGLAVITYAQLQRGNSVVVMAKFEFELVLKVVEKYKVTHMWVVPPVILALAKEK LVKKYDLSSLKQIGSGAAPLGKDLMVECARKFPHAAILQGYGMTETCSIISVENPRVGPRNSGSAGTLVAGVESQIISVDTMKPLPPNQLGEIWVRGPNM MQGYFNNPEATKQTIDKKGWVHTGDLGYFDEKGQLHVVDRIKELIKYKGFQVAPAELEGLLVSHPEILDAVVIPFPDAEAGEVPAAYVVRDINSSLTEVD VQKFIADQVAPFKRLKRVTFINTVPKSASGKILRRELIDKVKSKM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05160			AMP-dependent synthetase and l...		Lus10016135 [exp]	0	1
AT5G64130			cAMP-regulated phosphoprotein ...		Lus10036768 [exp]	30.5	0.5668
AT5G65270		AtRABA4a	RAB GTPase homolog A4A (.1)		Lus10023153 [exp]	157.5	0.4760

Compare expression of checked genes

Lus10016135 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.