Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000977 [exp] 276 / 9e-91 ND / Lus10029529 [exp] 273 / 1e-88 ND / Lus10019049 [exp] 212 / 3e-68 ND / Lus10000303 [exp] 204 / 1e-64 ND / Lus10039943 [exp] 205 / 5e-64 ND / Lus10027694 [exp] 190 / 3e-59 ND / Lus10025361 [exp] 193 / 2e-57 AT2G14740 454 / 2e-155 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) Lus10042578 [exp] 184 / 3e-57 ND / Lus10032910 [exp] 184 / 7e-57 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016136 pacid=23171841 polypeptide=Lus10016136 locus=Lus10016136.g ID=Lus10016136.BGIv1.0 annot-version=v1.0 ATGAGCAATTCGGGAGATTCATCGGTCAGTAAGGGTGACGGAACCAATTACACCGAACACTTTTTATCCGACGATGTTTACGATACTGTCGAGGAAGCTT GTGAAGCTGCAAAGCGAATTGCCCAGACGCTTAATTTCAAGTTGACTAAAGGATCCAACAAAATAAACAGGGCAGAGCGAGAGTACCGTATGTATCTGTA TTGCTCTCGGGGACCTGCTCGTAAATCTTCATGTTCCGACCCGCCGAAACGGATTACGGAGACGAAAAAGAGTGGCTGCCCCTTCAAATTGGCGGTGAGG TGTCGGGTCGTAGAGGAGCTCTCGAAGGTTACACCGTGTAACTGTGTAGTTGAGACAACTCATGGAATCCCATGCAATTGTAGTATGTACTCTAAGGAAG TTGGCGAGGAGGAGGTGAAACCATACCATTTGCATCAGTTTTGGCGTTCATTGTCATACACGAGTCCACTAGATCATGAGATCTGGGACGACCATGATGC TACTGGCCGCCACATTCTTGATGGGATGATTGAAACTATTTGCGATAGAGGGGGGCCGTCCGTAAGGGCGTTGAGTCAATTAGTTCAGTCAGCATTTCAA CCCGAGTCAGAGGGTTTGAAGGAGCTTAAGGGTTTCGATGCTTTTAAAGGTCGACCTCTTGCTAGAAAGACCGACGGTCGGAATCCTTCTTGGCATGAGC ATGCTAGTGCGCAGTGTACTCCTCCCAAGAGCAAAGGTAGCTCGACTCGATCTACACCTTCGATAAAGGGTACACCTTCGAACACTAGCTCGACACCAGG CCTATCACTTCCTTCTAGGGTCGGAGTTACTAGGTACCAGGGTACTAAACATAAGTTCGAAAATGGAACAAAACACTCAGCTATGTCGTCTGAGGCAAGT AAAAAAACAACAAAGAGAGTCTCTAATCACGACGACCTTCTCTCTGGCGCTGATAGCCCACGTAGAGGTCCTCAAACTGATGGCGCATCCCCTTCATGTG ATCGTAGTACTTCTTAG
AA sequence Show only first row Show all	>Lus10016136 pacid=23171841 polypeptide=Lus10016136 locus=Lus10016136.g ID=Lus10016136.BGIv1.0 annot-version=v1.0 MSNSGDSSVSKGDGTNYTEHFLSDDVYDTVEEACEAAKRIAQTLNFKLTKGSNKINRAEREYRMYLYCSRGPARKSSCSDPPKRITETKKSGCPFKLAVR CRVVEELSKVTPCNCVVETTHGIPCNCSMYSKEVGEEEVKPYHLHQFWRSLSYTSPLDHEIWDDHDATGRHILDGMIETICDRGGPSVRALSQLVQSAFQ PESEGLKELKGFDAFKGRPLARKTDGRNPSWHEHASAQCTPPKSKGSSTRSTPSIKGTPSNTSSTPGLSLPSRVGVTRYQGTKHKFENGTKHSAMSSEAS KKTTKRVSNHDDLLSGADSPRRGPQTDGASPSCDRSTS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10016136 [exp]	0	1
					Lus10008789 [exp]	2.0	1.0000
AT1G35720		ATOXY5, ANNAT1	annexin 1 (.1)		Lus10036470 [exp]	2.8	1.0000
AT3G16857	GARP	ARR1	response regulator 1 (.1.2)		Lus10039345 [exp]	5.5	1.0000
					Lus10012669 [exp]	11.3	1.0000
					Lus10013504 [exp]	12.6	1.0000
					Lus10024762 [exp]	13.2	1.0000
					Lus10027530 [exp]	14.4	1.0000
					Lus10032968 [exp]	15.3	0.9998
AT2G36190		ATCWINV4	cell wall invertase 4 (.1)		Lus10014217 [exp]	15.5	1.0000
					Lus10026042 [exp]	16.0	1.0000

Compare expression of checked genes

Lus10016136 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.