Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29900 1939 / 0 VEN3, CARB VENOSA 3, carbamoyl phosphate synthetase B (.1) AT1G36180 56 / 3e-07 ACC2 acetyl-CoA carboxylase 2 (.1.2) AT1G36160 53 / 2e-06 GSD1, PAS3, GK, EMB22, AT-ACC1, ACC1 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) AT1G03090 51 / 5e-06 MCCA methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.1), methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.2) AT5G35360 47 / 6e-05 CAC2 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021430 [exp] 2292 / 0 AT1G29900 1965 / 0.0 VENOSA 3, carbamoyl phosphate synthetase B (.1) Lus10028196 [exp] 58 / 4e-08 AT5G35360 892 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10028753 [exp] 57 / 1e-07 AT5G35360 888 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10017534 [exp] 56 / 1e-07 AT5G35360 892 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10006934 [exp] 53 / 2e-06 AT1G36160 3698 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) Lus10024748 [exp] 53 / 2e-06 AT1G36160 2397 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) Lus10042623 [exp] 48 / 7e-05 AT1G03090 1064 / 0.0 methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.1), methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G023100 [exp] 1892 / 0 AT1G29900 1902 / 0.0 VENOSA 3, carbamoyl phosphate synthetase B (.1) Potri.008G216501 [exp] 211 / 1e-62 AT1G29900 219 / 2e-66 VENOSA 3, carbamoyl phosphate synthetase B (.1) Potri.002G092700 [exp] 55 / 4e-07 AT1G36160 3806 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) Potri.018G146300 [exp] 54 / 5e-07 AT5G35360 911 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Potri.005G169100 [exp] 54 / 6e-07 AT1G36160 3800 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) Potri.005G213300 [exp] 51 / 4e-06 AT1G03090 1099 / 0.0 methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.1), methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.2) Potri.006G078200 [exp] 50 / 6e-06 AT5G35360 926 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF02787 [flax] [poplar] CPSase_L_D3 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CL0123 [flax] [poplar] PF02142 [flax] [poplar] MGS MGS-like domain CL0179 [flax] [poplar] ATP-grasp PF02786 [flax] [poplar] CPSase_L_D2 Carbamoyl-phosphate synthase L chain, ATP binding domain CL0483 [flax] [poplar] PreATP-grasp PF00289 [flax] [poplar] Biotin_carb_N Biotin carboxylase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10016137 pacid=23171801 polypeptide=Lus10016137 locus=Lus10016137.g ID=Lus10016137.BGIv1.0 annot-version=v1.0 ATGGATCTCAGAACCTTCCAATCCCCATATTCCCGCAGCTCCCTCCTCTTCAAATCCGACATCCACCTCCTCTCCCCTCCGCCGCAAACGCCGCCGCCGA TCTCCTCCTCCCGCCGCCACGTCACTTTCCCTCCTCTCACCCTCCAATCACGCGCCACCCGATCCATTCCCCCGCCGCAATGCACCGCCGCCACGTCAGC TCCAACCACCCCGAAGAACAAGGTCGGAAAGCGGATAGACATCAAGAAGATCATGATACTAGGAGCAGGCCCAATCGTCATCGGACAAGCTTGCGAGTTC GATTACTCGGGAACCCAAGCTTGCAAAGCTCTCAAAGAAGAAGGGTATGAAGTCATTCTAATCAATTCGAATCCTGCCACCATAATGACCGACCCGGATC TAGCTGATCGGACTTACGTATCTCCTTTAACCCCTGAAGTGGTTGAGAGAATCATCGAGAAGGAAAAGCCTGATGCTTTACTACCCACCATGGGTGGACA GACTGCTTTGAACTTAGCTGTTGCGTTGGCTGAAAATGGGGTGTTGGCAAAGTACAATGTGGAGCTGATTGGTGCCAAGCTTGAAGCTATTAAGAAAGCT GAGGATAGAGAGCTTTTCAAGGATGCTATGAAGAAGATTGGACTCAAGACTCCGCCTTCAGGAATTGGTACTACTTTGGATGAATGTTTTAGCATAGCTG GCGAGATTGGTGAGTTTCCATTGATTATTCGGCCGGCTTTTACATTGGGAGGAACCGGGGGAGGGATTGCTTATAATAAGGAGGAGTTTGAATCGATATG TAAGTCGGGGCTGAATGCGAGCTTAACGAGTCAGGTGCTTGTGGAGAAGTCTTTGCTTGGGTGGAAAGAGTATGAATTGGAGGTGATGAGGGATTTGGCT GACAATGTGGTGATTATTTGTTCGATTGAGAATATCGATGCAATGGGGGTTCATACTGGCGATTCGATTACTGTGGCGCCTGCTCAGACCTTGACGGATA AGGAGTACCAGAGGTTGAGGGACTATTCTATTCGGATTATTAGGGAGATTGGTGTGGAGTGTGGGGGGTCTAATGTGCAGTTTGCTGTGAATCCTGTTGA TGGGGAGGTTATGATTATTGAGATGAATCCTAGAGTTTCGAGGTCTTCGGCTTTGGCTTCGAAAGCTACGGGTTTTCCTATTGCTAAGATGGCTGCTAAG CTCTCTGTTGGGTACTCTCTTGATCAGATTCCTAATGATATCACTAAGAAGACTCCTGCTAGCTTTGAGCCTTCCATTGATTACGTGGTCACTAAGATAC CGCGATTTGCGTTCGAGAAGTTCCCAGGTTCGCAGCCGATCCTGACAACGCAGATGAAATCCGTGGGAGAAGACATGTCGATGGGCCGGACGTTCCAGGA GTCGTTTCAAAAGGCGGTTCGCGGACTAGAGTGTGGCTACCCCGGGTGGGGATGTTCTAAAGTGAAGGAGCTAGAATGGGATTGGGACCAGTTGAAGTAC AGTCTGCGGGTTCCAAACCCGAACCGAATCCATTCCATCTACGCGGCGATGAAAAAGGGGATGCAAGTGGACGAGATTCACCAGCTGAGCTTCATCGACA AGTGGTTCCTCACTCAGCTTAAAGAGCTTGTTGATGTCGAGCAGTATCTCATGTCCAAGAAGAGCTTGTCCGATCTGATGAAGGATGACCTTTATGAGGT TAAGAAGCGCGGGTTTAGCGATAAGCAGATCGCCTTCGCCACCAAGTCGACCGAGAAGGAGGTGAGAAGGCTTCGATTGTCGTTCGGTATCGCTCCAGCA TATAAGCGGGTCGATACCTGTGCTGCTGAGTTCGAGGCCGACACTCCTTATATGTATTCGTCGTATGATTCCGAGTGCGAGGCGGCTCCTACTTCGAAGA AGAAGGTCTTGATCTTGGGCGGAGGCCCTAACCGAATCGGTCAGGGTATCGAGTTCGATTACTGCTGCTGCCACACCTCATTCGCCCTCCAGGATGCAGG ATATGAGACGATTATGATGAACTCGAATCCAGAGACGGTGTCTACAGACTATGACACGAGCGATCGTCTCTACTTCGAACCTTTGACGATAGAAGACGTT CTGAACGTGATCGATTTGGAGCGTCCCGACGGGATAATCGTACAGTTTGGAGGGCAGACGCCGCTGAAGCTGGCATTGCCGATTCAGCAGTACTTGGACG AGAACAAGCCGATGGCGGCCAGTGGGGCGGGCCATGTCCGAATCTGGGGGACGTCGCCGGACAATATCGATGCAGCGGAAGACAGGGAGAGGTTTAATGC CATCTTGAAAGAGCTAGAGATCGAGCAACCGAAAGGAGGCATAGCAAAGAGCGAGGCTGACGCTTTCGCAATTGCAGCGGAGATCGGTTACCCTGTAGTC GTCAGGCCCTCTTATGTTCTGGGCGGTCGAGCTATGGAGATCGTGTACAGCGATGAAAAGCTCGGTACTTATCTCGAAACTGCGGTAGAGGTGGACCCTG AGCGGCCTGTGTTGATCGATAAGTACCTGTCGGACGCTGTTGAGATCGATATAGACGCCCTGGCGGATTTGTATGGCAATGTGGTGATCGGAGGGATCAT GGAGCATATTGAGCAGGCCGGGGTGCATTCCGGAGACTCGGCATGCATTCTCCCTACGCAGACGGTATCGACTTCATGCTTGGCGAAGATCAGGACGTGG ACCGAGAAATTGGCGAAGCGACTCCGAGTGTGCGGACTTATGAACTGTCAGTATGCTATCACTGCAGCCGGAGAGGTGTTCTTGCTCGAGGCGAATCCTC GTGCCTCTAGGACTGTCCCTTTCGTCTCGAAGACGATTGGCCATCCGTTGGCAAAGTATGCTGCCCTTGTAATGTCCGGGAAATCACTTGACGAGGACCT AGGGTTCACGAAAGAAGTGATCCCATCGCACGTGGCGGTAAAGGAAGCGGTTTTACCGTTCGAGAAGTTTGCGGGCTGCGATGTGGTTCTTGGACCCGAG ATGCGGAGCACGGGAGAGGTTATGGGGATCGATTTCCGCGTCGCTGTCGCGTTTGCAAAGGCTCAATTAGCCGCGGGGCAGAAGCTGCCGCTGTCGGGAA CAGTATTCCTCAGCCTCAACGACCTGACGAAGGAGCCCCACCTCGAAAGGCTGGCAAAGGCTTTCTTACAACTCGGGTTCAAGATCGTCGCAACTTCCGG ATCAGCTCGCTTCCTTGAGCTAAAGGGGATCCCCGTCGAGCGGGTACTGAAGATGCACGAGGGGCGTCCGCACGCTGGGGACATGGTGGCCAACGGGGAC ATACATTTGATGGTGATCACGAGCTCGGGGGATGACTTGGACCAGATCGACGGGAGGCTCCTGAGAAGGATGGCACTCGCGTATAAGGTTCCGGTGATCA CGACTGTGGCTGGCGCGCTGGCGACTGCGGAGGCAATCAAGAGTGTGGCCGAGTCGAGCTTCGATGTGATGGCGCTTCAGGACTACTTTGATGTAGGGCT GCAGGAAGACAGACGTCGTCATATGTTGCAGTCAGCATCACCACTTTCCTTATGA
AA sequence Show only first row Show all	>Lus10016137 pacid=23171801 polypeptide=Lus10016137 locus=Lus10016137.g ID=Lus10016137.BGIv1.0 annot-version=v1.0 MDLRTFQSPYSRSSLLFKSDIHLLSPPPQTPPPISSSRRHVTFPPLTLQSRATRSIPPPQCTAATSAPTTPKNKVGKRIDIKKIMILGAGPIVIGQACEF DYSGTQACKALKEEGYEVILINSNPATIMTDPDLADRTYVSPLTPEVVERIIEKEKPDALLPTMGGQTALNLAVALAENGVLAKYNVELIGAKLEAIKKA EDRELFKDAMKKIGLKTPPSGIGTTLDECFSIAGEIGEFPLIIRPAFTLGGTGGGIAYNKEEFESICKSGLNASLTSQVLVEKSLLGWKEYELEVMRDLA DNVVIICSIENIDAMGVHTGDSITVAPAQTLTDKEYQRLRDYSIRIIREIGVECGGSNVQFAVNPVDGEVMIIEMNPRVSRSSALASKATGFPIAKMAAK LSVGYSLDQIPNDITKKTPASFEPSIDYVVTKIPRFAFEKFPGSQPILTTQMKSVGEDMSMGRTFQESFQKAVRGLECGYPGWGCSKVKELEWDWDQLKY SLRVPNPNRIHSIYAAMKKGMQVDEIHQLSFIDKWFLTQLKELVDVEQYLMSKKSLSDLMKDDLYEVKKRGFSDKQIAFATKSTEKEVRRLRLSFGIAPA YKRVDTCAAEFEADTPYMYSSYDSECEAAPTSKKKVLILGGGPNRIGQGIEFDYCCCHTSFALQDAGYETIMMNSNPETVSTDYDTSDRLYFEPLTIEDV LNVIDLERPDGIIVQFGGQTPLKLALPIQQYLDENKPMAASGAGHVRIWGTSPDNIDAAEDRERFNAILKELEIEQPKGGIAKSEADAFAIAAEIGYPVV VRPSYVLGGRAMEIVYSDEKLGTYLETAVEVDPERPVLIDKYLSDAVEIDIDALADLYGNVVIGGIMEHIEQAGVHSGDSACILPTQTVSTSCLAKIRTW TEKLAKRLRVCGLMNCQYAITAAGEVFLLEANPRASRTVPFVSKTIGHPLAKYAALVMSGKSLDEDLGFTKEVIPSHVAVKEAVLPFEKFAGCDVVLGPE MRSTGEVMGIDFRVAVAFAKAQLAAGQKLPLSGTVFLSLNDLTKEPHLERLAKAFLQLGFKIVATSGSARFLELKGIPVERVLKMHEGRPHAGDMVANGD IHLMVITSSGDDLDQIDGRLLRRMALAYKVPVITTVAGALATAEAIKSVAESSFDVMALQDYFDVGLQEDRRRHMLQSASPLSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29900		VEN3, CARB	VENOSA 3, carbamoyl phosphate ...		Lus10016137 [exp]	0	1
AT3G09630			Ribosomal protein L4/L1 family...		Lus10019904 [exp]	1.0	0.9556
AT5G04520			Protein of unknown function DU...		Lus10028831 [exp]	2.4	0.9401
AT4G35490		MRPL11	mitochondrial ribosomal protei...		Lus10035432 [exp]	5.7	0.9309
AT3G02650			Tetratricopeptide repeat (TPR)...		Lus10013236 [exp]	6.0	0.9457
AT4G25730			FtsJ-like methyltransferase fa...		Lus10023555 [exp]	6.9	0.9297
AT3G57610		ADSS, ATPURA	adenylosuccinate synthase (.1)		Lus10040512 [exp]	7.7	0.9143
AT5G06550			unknown protein		Lus10029343 [exp]	7.9	0.9343
AT3G09630			Ribosomal protein L4/L1 family...		Lus10026476 [exp]	8.7	0.9498
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031763 [exp]	9.5	0.9407
AT4G35490		MRPL11	mitochondrial ribosomal protei...		Lus10031045 [exp]	10.5	0.9327

Compare expression of checked genes

Lus10016137 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.