Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08110 290 / 2e-100 lactoylglutathione lyase family protein / glyoxalase I family protein (.1.2.3.4) AT1G67280 77 / 2e-16 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2) AT1G11840 70 / 3e-14 ATGLX1 glyoxalase I homolog (.1.2.3.4.5.6) AT2G28420 40 / 0.0003 GLYI8 glyoxylase I 8, Lactoylglutathione lyase / glyoxalase I family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021429 [exp] 365 / 5e-130 AT1G08110 297 / 3e-104 lactoylglutathione lyase family protein / glyoxalase I family protein (.1.2.3.4) Lus10011115 [exp] 78 / 3e-16 AT1G67280 543 / 0.0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2) Lus10043235 [exp] 77 / 3e-16 AT1G67280 551 / 0.0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2) Lus10003523 [exp] 72 / 3e-14 AT1G11840 495 / 5e-174 glyoxalase I homolog (.1.2.3.4.5.6) Lus10002943 [exp] 71 / 5e-14 AT1G11840 447 / 5e-160 glyoxalase I homolog (.1.2.3.4.5.6) Lus10038612 [exp] 67 / 2e-12 AT1G67280 455 / 4e-161 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2) Lus10000007 [exp] 39 / 0.0004 AT1G11840 131 / 1e-39 glyoxalase I homolog (.1.2.3.4.5.6)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G007200 [exp] 320 / 2e-111 AT1G08110 318 / 6e-111 lactoylglutathione lyase family protein / glyoxalase I family protein (.1.2.3.4) Potri.004G214966 [exp] 103 / 2e-28 AT1G08110 110 / 3e-32 lactoylglutathione lyase family protein / glyoxalase I family protein (.1.2.3.4) Potri.018G084800 [exp] 78 / 2e-16 AT1G67280 553 / 0.0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2) Potri.006G160600 [exp] 77 / 4e-16 AT1G67280 571 / 0.0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2) Potri.004G013200 [exp] 74 / 2e-15 AT1G11840 496 / 8e-179 glyoxalase I homolog (.1.2.3.4.5.6) Potri.018G042100 [exp] 71 / 7e-14 AT1G67280 488 / 3e-174 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2) Potri.003G062400 [exp] 40 / 0.0007 AT1G80160 261 / 2e-90 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0104 [flax] [poplar] Glyoxalase PF00903 [flax] [poplar] Glyoxalase Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10016138 pacid=23171863 polypeptide=Lus10016138 locus=Lus10016138.g ID=Lus10016138.BGIv1.0 annot-version=v1.0 ATGGCGGCTGCCACGTCAATCACTACATCCTTATCGTCTCGCCTCTCACTCTTTCGTCGTCTTCGTCTCCACTTACCAAACCCTTCTTTTGTTCCACGAT CACCGATTCCTCCATCAAGCACTGCTCTTTCTGTTTTGCAGGGCTCGAAACAACGGTCGAGATTGTTCTCTGCCATGGCGTCGTCATCGGATTCGAAGGA TTCGCCTGCTAACAACCCTGGTCTTCATACTTCCCCTGATGAAGCTACCAAAGGTTACTTCATGCAGCAAACTATGTTTCGGATTAAGGACCCGAAAGTC AGCCTTGATTTCTACTCTCGTGTACTGGGGATGTCTTTGCTGAAGAGGCTGGATTTTCCAGAGATGAAGTTCAGCTTGTACTTCATGGGCTACGAGGATC CTGCATCTGTTCCAAGTGATGCTGTAGAAAGAACCGTTTGGGCGTTCGCTAAGAAGGCTACTATTGAGCTAACACATAATTGGGGTACCGAAAGTGATCT TGAGTTTAAAGGATATCACAATGGTAACTCTGATCCTCGTGGCTTCGGACATATCGGTATAACTGTTGATGATACGTACAAGGCATGCAAGAGATTCGAA AGCCTCGGAGTGGAATTCGTTAAAAAGCCAGATGATGGAAAGATGAAAGGGTTAGCGTTTATCAAGGACCCCGATGGATACTGGATCGAGATCTTCGACC TCAAGAATATGAAAGACATAGCTAAAGCTGGTGTTGCTTGA
AA sequence Show only first row Show all	>Lus10016138 pacid=23171863 polypeptide=Lus10016138 locus=Lus10016138.g ID=Lus10016138.BGIv1.0 annot-version=v1.0 MAAATSITTSLSSRLSLFRRLRLHLPNPSFVPRSPIPPSSTALSVLQGSKQRSRLFSAMASSSDSKDSPANNPGLHTSPDEATKGYFMQQTMFRIKDPKV SLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDPASVPSDAVERTVWAFAKKATIELTHNWGTESDLEFKGYHNGNSDPRGFGHIGITVDDTYKACKRFE SLGVEFVKKPDDGKMKGLAFIKDPDGYWIEIFDLKNMKDIAKAGVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08110			lactoylglutathione lyase famil...		Lus10016138 [exp]	0	1
AT2G05630		ATG8D	Ubiquitin-like superfamily pro...		Lus10027186 [exp]	1.0	0.9565
AT5G09260		VPS20.2	vacuolar protein sorting-assoc...		Lus10015693 [exp]	3.0	0.9452
AT5G03030			Chaperone DnaJ-domain superfam...		Lus10040376 [exp]	3.5	0.9419
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10034468 [exp]	5.0	0.9489
AT5G11950		LOG8	LONELY GUY 8, Putative lysine ...		Lus10026131 [exp]	5.7	0.9443
AT4G16520		ATG8F	autophagy 8f, Ubiquitin-like s...		Lus10000733 [exp]	6.0	0.9547
AT4G26100		CKL1, CK1	casein kinase 1 (.1)		Lus10021580 [exp]	6.2	0.9393
AT5G03560			Tetratricopeptide repeat (TPR)...		Lus10027932 [exp]	6.3	0.9390
AT1G02860		BAH1, NLA	nitrogen limitation adaptation...		Lus10030375 [exp]	6.3	0.9464
AT2G32090			Lactoylglutathione lyase / gly...		Lus10010552 [exp]	7.3	0.9307

Compare expression of checked genes

Lus10016138 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.