Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28100 643 / 0 ATFUC1 alpha-L-fucosidase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021427 [exp] 915 / 0 AT2G28100 671 / 0.0 alpha-L-fucosidase 1 (.1) Lus10031681 [exp] 449 / 5e-155 AT2G28100 485 / 2e-168 alpha-L-fucosidase 1 (.1) Lus10027390 [exp] 438 / 1e-150 AT2G28100 476 / 6e-165 alpha-L-fucosidase 1 (.1) Lus10027391 [exp] 54 / 4e-09 ND 44 / 4e-06
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G006900 [exp] 694 / 0 AT2G28100 704 / 0.0 alpha-L-fucosidase 1 (.1) Potri.015G133500 [exp] 461 / 4e-160 AT2G28100 502 / 3e-175 alpha-L-fucosidase 1 (.1) Potri.012G131400 [exp] 456 / 7e-158 AT2G28100 506 / 6e-177 alpha-L-fucosidase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF01120 [flax] [poplar] Alpha_L_fucos Alpha-L-fucosidase CL0202 [flax] [poplar] GBD PF00754 [flax] [poplar] F5_F8_type_C F5/8 type C domain
Representative CDS sequence Show only first row Show all	>Lus10016140 pacid=23171806 polypeptide=Lus10016140 locus=Lus10016140.g ID=Lus10016140.BGIv1.0 annot-version=v1.0 ATGTCAATGTTCCTCCACTTCGGGCCCAACACCTTCACAAATTCCGAGTGGGGCACGGGCCACGCCGACCCGACCGTCTTCGCCCCGACCCAGCTCAACG CGACCCAGTGGGTGGAAGTCGCTAAAGAAACCGGATTCAACAGAGTCATCCTCACGGCCAAGCACCACGACGGATTTTGCCTCTGGCCGAGTGAGTATAC AAATTACTCTGTCAAATCGAGCTCTCTGTGGAAGGATGGGAATCGCGATGTTGTAAAGGAGCTTGCTTTGGCGGCAGAGAAGGGTGGATTGGGGTTTGGG GTTTACCTATCGCCGTGGGATCGGCATGAGGATTGCTATGGGAAGACTGTTGAGTATAATGAGTTCTATGTTGGGCAGATGACTGAGCTCTTGACCAGCT ATGGGGAGATCAAGGAGGTTTGGTTAGATGGAGCCAAAGGGGAAGGTGCAAAAGACATGGACTATTACTTTGAGAGATGGTTCAATCTGATCCATCAGCA TCAGCCAAAGGCTGTCATATTCTCCGATGCCGGCCCCGACACCAGATGGATTGGTGACGAAGGTGGCGTTGCTGGCTCCACTTGCTGGTCTCTCTTCAAT CGCAGCGACGCCACGATCGGTGGCACTGACACCCGGTACTCGCAAAGCGGAGACCGCTACGGGCACGACTGGGTGCCGGCAGAATGTGATGTCTCGATCC GACCCGGTTGGTTCTGGCACCCGTCCGAGTCGCCCAAGTCAGCATTGCAGCTTCTACACATATACTACAAATCTGCAGGAAGAAACTGCCTCCTCTTACT AAACGTTCCACCAAACTCTTCAGGACTCATCTCACCCGAGGACGTCCAAGTCCTCCGTGAATTCGCAAACCTACGCCGATCCATATTCTCACATAATCTT GCTCAGAACGCCACTTTTCTTGCCAGCAGCACAAGAGGTGGTTCTCAAAATTCCCGTTTCGCCCCCAACAACGTGTTGAAAGAAGGCATCTATACGTACT GGGCGCCGGAGGAGAACAGGTCTTTCTCGACATTGTACATCGACCTTGGCGGTATGGTGTTGTTCAACGTGATTCGAGTTCAGGAGCCGATCCACATGGG ACAGCGAATCGTTGCCTTCCACGTGGAGGCTTTGAATCCAGATGGTGAGTGGATTCAAGTTGTTGAGGGAACTACGGTTGGATATCAAAGGCTGTTGCTT TTCCCAAGTGTCGTAGCTCGGCAGCTTAGGCTTGTTGTCGATCAGAGTCGAGCTGATCCGCTTATCTCGTATATCGGAGTTTACATAGATCGATATTCGA GTCCCGATCGAGTGATTCGGCTAAGTCCATGCACCGGCCATTCTCATCATGTTGCTGTATTGTAA
AA sequence Show only first row Show all	>Lus10016140 pacid=23171806 polypeptide=Lus10016140 locus=Lus10016140.g ID=Lus10016140.BGIv1.0 annot-version=v1.0 MSMFLHFGPNTFTNSEWGTGHADPTVFAPTQLNATQWVEVAKETGFNRVILTAKHHDGFCLWPSEYTNYSVKSSSLWKDGNRDVVKELALAAEKGGLGFG VYLSPWDRHEDCYGKTVEYNEFYVGQMTELLTSYGEIKEVWLDGAKGEGAKDMDYYFERWFNLIHQHQPKAVIFSDAGPDTRWIGDEGGVAGSTCWSLFN RSDATIGGTDTRYSQSGDRYGHDWVPAECDVSIRPGWFWHPSESPKSALQLLHIYYKSAGRNCLLLLNVPPNSSGLISPEDVQVLREFANLRRSIFSHNL AQNATFLASSTRGGSQNSRFAPNNVLKEGIYTYWAPEENRSFSTLYIDLGGMVLFNVIRVQEPIHMGQRIVAFHVEALNPDGEWIQVVEGTTVGYQRLLL FPSVVARQLRLVVDQSRADPLISYIGVYIDRYSSPDRVIRLSPCTGHSHHVAVL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28100		ATFUC1	alpha-L-fucosidase 1 (.1)		Lus10016140 [exp]	0	1
AT5G64290		DCT, DIT2.1	dicarboxylate transport 2.1 (....		Lus10003967 [exp]	3.7	0.8675
AT4G39840			unknown protein		Lus10041688 [exp]	6.3	0.8649
AT5G63870		PP7, ATPP7	serine/threonine phosphatase 7...		Lus10033478 [exp]	11.2	0.7959
AT3G49720			unknown protein		Lus10011564 [exp]	12.6	0.8074
AT2G26730			Leucine-rich repeat protein ki...		Lus10017756 [exp]	13.2	0.8447
AT1G30760			FAD-binding Berberine family p...		Lus10038445 [exp]	14.2	0.7871
AT4G32390			Nucleotide-sugar transporter f...		Lus10002023 [exp]	15.0	0.8591
AT1G73650			Protein of unknown function (D...		Lus10031343 [exp]	17.1	0.7989
AT3G11320			Nucleotide-sugar transporter f...		Lus10009878 [exp]	17.9	0.7980
AT4G28230			unknown protein		Lus10031619 [exp]	21.5	0.8327

Compare expression of checked genes

Lus10016140 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.