Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08125 183 / 9e-56 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT5G44170 60 / 2e-10 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G73320 56 / 1e-08 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G49560 45 / 2e-05 Putative methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021425 [exp] 245 / 3e-80 AT1G08125 385 / 2e-135 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10021426 [exp] 113 / 3e-29 AT5G64520 262 / 3e-86 homolog of X-ray repair cross complementing 2 (XRCC2) (.1), homolog of X-ray repair cross complementing 2 (XRCC2) (.2), homolog of X-ray repair cross complementing 2 (XRCC2) (.3) Lus10031894 [exp] 63 / 3e-11 AT1G73320 362 / 1e-126 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10018640 [exp] 59 / 5e-10 AT5G44170 348 / 1e-122 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10039876 [exp] 52 / 4e-08 AT5G44170 244 / 5e-83 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10014309 [exp] 43 / 0.0002 AT5G49560 283 / 1e-95 Putative methyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G006800 [exp] 191 / 3e-59 AT1G08125 370 / 4e-129 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.017G017000 [exp] 69 / 1e-13 AT5G44170 316 / 3e-110 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.017G153900 [exp] 60 / 3e-10 AT1G73320 347 / 2e-120 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.007G025600 [exp] 44 / 5e-05 AT5G49560 289 / 2e-98 Putative methyltransferase family protein (.1) Potri.009G068400 [exp] 43 / 0.0001 AT2G26810 345 / 2e-121 Putative methyltransferase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF10294 [flax] [poplar] Methyltransf_16 Lysine methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10016141 pacid=23171828 polypeptide=Lus10016141 locus=Lus10016141.g ID=Lus10016141.BGIv1.0 annot-version=v1.0 ATGGATATAACCACTTCACACGAATCGCGGGCATCTTCAGAATCTCAGAAAAGGTCTGAACTTGGACTCTTTGATCATTTTACTCGAGCTGTGCATTTCG ATTCCTTATCCTTCGAGCTCGCTGTGAATAATTGTTCACTGCAGAAGGCTCATTTGCGAATAAATTTGCTTTCTTGGATACTGCGTCCATGGAAGCTGAC AGGGATGGCGCTTCTAGGATGCGATGTGATATTAACAGACCAGGTCGAGGTGCTGCCACTGCTTATACGAAATGTGGAACGTAGCACAGCTAGAGTCGTA CAATCCGATCGTAATTCAGACTCGTTTGGCTCGATCGCTGCTGCTGAACTAGACTGGGAAAATGAGGACCATATTCGAGCTGTTGAGCTGCCTTTCGACT ACATCATTGGCACCGATGTGGTTTACGCGGAGCATCTTTTGGAGCCCTTATTGCAGACCATCTTCGCATTATTAGGGCCGAAAACCGTCATCCTCTTGGG GCACGAGATTTATTCTACGATCGTCCACAAGAAAATGCTTGCCATGTGGAGAAGCAACTTCGAGGTGAAAATCATTCAGAAAGCTAAGCATTCAACTCTA CATGATGGAAATGAAACACCCTGGTGGAAATGTATTAGCCATAACTCAAGAAACTCGCGAGCAGACACGGAATCCACCGGTGGAAGAGGAAATGGAAGAA AGGGGCTTTCCCTGGACCAGATTTGGGAAGGTATGGTTATGGAGATCAGAAGAGTTATTCTGGTTCATCCGATGCTTGTTATCACTACAAAAGCAACCAT TCTTGGGGATGCTGCTTCAGTTTTGACGACGACTCAACCTTCGCATCATCGCGAGCTCTTTTCGTGTTATGTAAGACAAATTCTGGACGGTTATAACTAG
AA sequence Show only first row Show all	>Lus10016141 pacid=23171828 polypeptide=Lus10016141 locus=Lus10016141.g ID=Lus10016141.BGIv1.0 annot-version=v1.0 MDITTSHESRASSESQKRSELGLFDHFTRAVHFDSLSFELAVNNCSLQKAHLRINLLSWILRPWKLTGMALLGCDVILTDQVEVLPLLIRNVERSTARVV QSDRNSDSFGSIAAAELDWENEDHIRAVELPFDYIIGTDVVYAEHLLEPLLQTIFALLGPKTVILLGHEIYSTIVHKKMLAMWRSNFEVKIIQKAKHSTL HDGNETPWWKCISHNSRNSRADTESTGGRGNGRKGLSLDQIWEGMVMEIRRVILVHPMLVITTKATILGDAASVLTTTQPSHHRELFSCYVRQILDGYN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08125			S-adenosyl-L-methionine-depend...		Lus10016141 [exp]	0	1
AT1G55250		HUB2, HISTONEMO...	histone mono-ubiquitination 2 ...		Lus10024057 [exp]	18.4	0.8265
AT1G76480			unknown protein		Lus10006035 [exp]	19.8	0.8427
AT4G05020		NDB2	NAD(P)H dehydrogenase B2 (.1),...		Lus10020087 [exp]	20.1	0.8068
AT3G14205			Phosphoinositide phosphatase f...		Lus10013184 [exp]	20.4	0.8223
AT4G17380		MSH4, ATMSH4	ARABIDOPSIS MUTS HOMOLOG 4, M...		Lus10000166 [exp]	23.5	0.8104
AT4G02460		PMS1	POSTMEIOTIC SEGREGATION 1, DNA...		Lus10030376 [exp]	28.0	0.8048
AT5G15940			NAD(P)-binding Rossmann-fold s...		Lus10022466 [exp]	29.4	0.8161
AT1G03670			ankyrin repeat family protein ...		Lus10020209 [exp]	32.8	0.7914
AT3G18215			Protein of unknown function, D...		Lus10009640 [exp]	33.9	0.8162
AT2G17787			unknown protein		Lus10017274 [exp]	46.3	0.8141

Compare expression of checked genes

Lus10016141 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.