Plant FIBer expression Database

Lus10016142 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G28105 169 / 4e-54 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021424
[exp]
318 / 1e-112 AT2G28105 158 / 8e-50 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G215300
[exp]
214 / 6e-72 AT2G28105 165 / 7e-53 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0021 OB PF08646 Rep_fac-A_C Replication factor-A C terminal domain
Representative CDS sequence
>Lus10016142 pacid=23171798 polypeptide=Lus10016142 locus=Lus10016142.g ID=Lus10016142.BGIv1.0 annot-version=v1.0
ATGGAAGGAAGAGGAGGAACAACAACAAAGATCTGTACAATGCTAGCAATCGATCACACGAACCTCTCCTACAGAGCCTGCTCAGTCTGCGAGCGAACCC
TCCCCGAAACTTCTGCCAATTCCACCTGCAAATTCTGCTCCACCTTCAACGCCGGTCAGCCTGCGCCGCCGCCGGCCCGCTTCTTCCGCCTCCTCGTCTC
GATCGCCACGGACACCGAGGTTATAACCGTGATGTGCTTCGACAGAGCTGCTAGGGTTCTGATCGGCTGCTCCGCCGACGAGCTCTTCCATTTCGCCAAG
CTTCATCCTTTCGCCGCGGTGAATTGCGGGAAAATATTGGAAGGGGAGATGGTGAAGATGACACTGTCGAAGCCAAAGAATAGGAATGCTCAACATCTTA
GAGCAGTTTCCATTGTACCTTTGAGGACTGGTTTTCAGCCGGCGATTAAGAGCCTTAGGGAGTTGTACAAGTCCAGACCAGGTTCAGCTCTACCTCCGAG
TTTGGGCTCAAACCCGTGA
AA sequence
>Lus10016142 pacid=23171798 polypeptide=Lus10016142 locus=Lus10016142.g ID=Lus10016142.BGIv1.0 annot-version=v1.0
MEGRGGTTTKICTMLAIDHTNLSYRACSVCERTLPETSANSTCKFCSTFNAGQPAPPPARFFRLLVSIATDTEVITVMCFDRAARVLIGCSADELFHFAK
LHPFAAVNCGKILEGEMVKMTLSKPKNRNAQHLRAVSIVPLRTGFQPAIKSLRELYKSRPGSALPPSLGSNP

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G28105 unknown protein Lus10016142
[exp]
0 1
AT5G16380 Protein of unknown function, D... Lus10026841
[exp]
4.2 0.7083
AT2G34790 MEE23, EDA28 MATERNAL EFFECT EMBRYO ARREST ... Lus10023363
[exp]
7.0 0.7150
Lus10014189
[exp]
10.4 0.6489
AT5G44440 FAD-binding Berberine family p... Lus10003646
[exp]
10.8 0.7040
AT4G11080 3xHMG-box1 3xHigh Mobility Group-box1, HM... Lus10033954
[exp]
14.7 0.6574
AT5G09310 unknown protein Lus10041297
[exp]
18.2 0.6567
AT3G24730 mRNA splicing factor, thioredo... Lus10011878
[exp]
18.9 0.6254
AT5G63650 SNRK2-5, SNRK2.... SNF1-RELATED PROTEIN KINASE 2H... Lus10004291
[exp]
21.2 0.5958
AT4G02590 bHLH bHLH059, UNE12 unfertilized embryo sac 12, ba... Lus10014726
[exp]
28.5 0.6522
AT4G16060 unknown protein Lus10016832
[exp]
30.3 0.6224

Lus10016142 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.