Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22950 315 / 7e-110 VPS24.1 SNF7 family protein (.1) AT3G45000 228 / 3e-76 VPS24.2 SNF7 family protein (.1.2) AT1G03950 91 / 2e-22 VPS2.3 vacuolar protein sorting-associated protein 2.3 (.1) AT5G44560 73 / 1e-15 VPS2.2 SNF7 family protein (.1.2) AT2G06530 72 / 3e-15 VPS2.1 SNF7 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021423 [exp] 370 / 6e-132 AT5G22950 354 / 2e-125 SNF7 family protein (.1) Lus10037660 [exp] 67 / 3e-13 AT2G06530 358 / 6e-127 SNF7 family protein (.1) Lus10015642 [exp] 54 / 1e-08 AT2G06530 338 / 1e-118 SNF7 family protein (.1) Lus10033914 [exp] 47 / 3e-06 AT1G03950 278 / 5e-96 vacuolar protein sorting-associated protein 2.3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G215500 [exp] 332 / 6e-117 AT5G22950 332 / 6e-117 SNF7 family protein (.1) Potri.008G034700 [exp] 314 / 1e-109 AT5G22950 337 / 2e-118 SNF7 family protein (.1) Potri.005G227000 [exp] 91 / 3e-22 AT1G03950 309 / 3e-108 vacuolar protein sorting-associated protein 2.3 (.1) Potri.002G035900 [exp] 88 / 2e-21 AT1G03950 308 / 8e-108 vacuolar protein sorting-associated protein 2.3 (.1) Potri.001G442500 [exp] 76 / 1e-16 AT5G44560 328 / 3e-115 SNF7 family protein (.1.2) Potri.011G154700 [exp] 76 / 1e-16 AT5G44560 331 / 1e-116 SNF7 family protein (.1.2) Potri.001G170400 [exp] 76 / 2e-16 AT2G06530 326 / 2e-114 SNF7 family protein (.1) Potri.018G065100 [exp] 72 / 2e-15 AT2G06530 332 / 9e-117 SNF7 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0235 [flax] [poplar] PspA PF03357 [flax] [poplar] Snf7 Snf7
Representative CDS sequence Show only first row Show all	>Lus10016143 pacid=23171803 polypeptide=Lus10016143 locus=Lus10016143.g ID=Lus10016143.BGIv1.0 annot-version=v1.0 ATGGAGAAGGTAGTGAACTTAATAAAGGGGAAGCCGAATCCGCAGCAGAAGCTGAGGGATTGGCAGCGGAGGCTTCGTCAGGAGTGCCGCAACATCGAGC GTCAGATCAGAGATATTCAGAGGGAGGAAAAGAATGTACAGAAAGCGATCAAGGAGGCTGCCAAGAGGAACGACATGGGATCAGCTAAGTCCCTTGCTAA GGAACTGGTGCGATCTAGGCAGACAGTGAACCGCCTTCATGAAAACAAGGCACAGATGAATTCGATATCGATGCACTTAGGAGAAAGCGTGGCAATTGCA CGTACTGTGGGACATCTATCGAAGAGTGCCGAGGTTATGAAACTCGTCAATAACCTGATGAAAGCTCCTGAAGTTGCTGTCACAATGCAAGAGTTCAGCA AAGAGATGACCAAGGCTGGAGTGATTGAAGAGTTTGTGAACGACGCTCTGGACGATGCTCTGGACACAGAAGATATGGAAGAGGAGATTGAGGAAGAAGT CGACAAAGTATTGACTGCAATAGCTGGCGAGACTGCTGCGGAGATGCCACAAGCAGTGAGGAAGGAGAGGGTAAAGCAACCGGTTCAAGCTGCGAGCACA TCAGAGGAAGAAGCCATTGCTGAAGGTGATGATGAGGAAGAGCTGGAAGCGATCAGGGCCCGGCTTGCTAAAGTCCGGTCATAA
AA sequence Show only first row Show all	>Lus10016143 pacid=23171803 polypeptide=Lus10016143 locus=Lus10016143.g ID=Lus10016143.BGIv1.0 annot-version=v1.0 MEKVVNLIKGKPNPQQKLRDWQRRLRQECRNIERQIRDIQREEKNVQKAIKEAAKRNDMGSAKSLAKELVRSRQTVNRLHENKAQMNSISMHLGESVAIA RTVGHLSKSAEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGVIEEFVNDALDDALDTEDMEEEIEEEVDKVLTAIAGETAAEMPQAVRKERVKQPVQAAST SEEEAIAEGDDEEELEAIRARLAKVRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22950		VPS24.1	SNF7 family protein (.1)		Lus10016143 [exp]	0	1
AT1G08970	CCAAT	NF-YC9, HAP5C	"nuclear factor Y, subunit C9"...		Lus10004468 [exp]	1.7	0.9092
AT5G50430		UBC33	ubiquitin-conjugating enzyme 3...		Lus10003932 [exp]	3.0	0.9022
AT5G28040	GeBP		DNA-binding storekeeper protei...		Lus10000940 [exp]	3.2	0.9032
AT3G47300		SELT	SELT-like protein precursor (....		Lus10040658 [exp]	4.5	0.8649
AT3G24315		ATSEC20	Sec20 family protein (.1)		Lus10023717 [exp]	4.5	0.9021
AT5G04850		VPS60.2	SNF7 family protein (.1.2)		Lus10008953 [exp]	6.2	0.8594
AT1G17080			Ribosomal protein L18ae family...		Lus10005580 [exp]	7.0	0.8717
AT1G71950			Proteinase inhibitor, propepti...		Lus10038252 [exp]	7.7	0.8718
AT5G03460			unknown protein		Lus10014419 [exp]	8.1	0.8924
AT4G23630		RTNLB1, BTI1	Reticulan like protein B1, VIR...		Lus10014948 [exp]	8.3	0.8401

Compare expression of checked genes

Lus10016143 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.