Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36870 396 / 9e-140 XTH32 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) AT3G44990 393 / 1e-138 AtXTH31, XTH31, ATXTR8, XTR8 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, xyloglucan endo-transglycosylase-related 8 (.1) AT1G14720 198 / 1e-61 ATXTH28, EXGT-A2, XTR2 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) AT1G32170 197 / 9e-61 XTH30, XTR4 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) AT1G10550 195 / 1e-60 XTH33, XET xyloglucan:xyloglucosyl transferase 33 (.1) AT3G25050 194 / 2e-60 XTH3 xyloglucan endotransglucosylase/hydrolase 3 (.1) AT5G57550 192 / 9e-60 XTR3, XTH25, EXGT-A5 xyloglucan endotransglycosylase 3, xyloglucan endotransglucosylase/hydrolase 25 (.1) AT4G18990 194 / 2e-59 XTH29, XTR13 xyloglucan endotransglucosylase/hydrolase 29 (.1) AT2G01850 190 / 2e-58 ATXTH27, EXGT-A3 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27, endoxyloglucan transferase A3 (.1) AT5G57560 189 / 2e-58 XTH22, TCH4 xyloglucan endotransglucosylase/hydrolase 22, Touch 4, Xyloglucan endotransglucosylase/hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021422 [exp] 530 / 0 AT2G36870 417 / 4e-148 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10041341 [exp] 472 / 1e-169 AT2G36870 421 / 2e-149 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10037377 [exp] 467 / 2e-167 AT2G36870 422 / 9e-150 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10023009 [exp] 372 / 5e-130 AT2G36870 466 / 3e-167 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10026535 [exp] 370 / 2e-129 AT2G36870 444 / 9e-159 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10001396 [exp] 370 / 3e-129 AT2G36870 460 / 8e-165 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10013822 [exp] 367 / 5e-128 AT2G36870 444 / 1e-158 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10026536 [exp] 322 / 6e-110 AT2G36870 402 / 1e-141 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10013823 [exp] 244 / 4e-81 AT2G36870 301 / 7e-104 xyloglucan endotransglucosylase/hydrolase 32 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G006600 [exp] 405 / 3e-143 AT3G44990 407 / 3e-144 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, xyloglucan endo-transglycosylase-related 8 (.1) Potri.006G122900 [exp] 393 / 2e-138 AT2G36870 478 / 4e-172 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Potri.016G098600 [exp] 392 / 5e-138 AT2G36870 477 / 1e-171 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Potri.009G163850 [exp] 211 / 3e-67 AT2G01850 319 / 6e-109 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27, endoxyloglucan transferase A3 (.1) Potri.010G102300 [exp] 200 / 3e-62 AT1G14720 470 / 7e-168 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) Potri.008G138400 [exp] 199 / 8e-62 AT1G14720 467 / 2e-166 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) Potri.001G136100 [exp] 197 / 5e-61 AT1G32170 469 / 6e-167 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) Potri.003G097300 [exp] 196 / 1e-60 AT1G32170 436 / 8e-154 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) Potri.006G071200 [exp] 189 / 1e-58 AT4G25810 379 / 3e-133 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.013G152400 [exp] 189 / 1e-58 AT4G03210 442 / 2e-158 xyloglucan endotransglucosylase/hydrolase 9 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00722 [flax] [poplar] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [flax] [poplar] Concanavalin PF06955 [flax] [poplar] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Lus10016144 pacid=23171810 polypeptide=Lus10016144 locus=Lus10016144.g ID=Lus10016144.BGIv1.0 annot-version=v1.0 ATGGCTACTACTTCTAATACTACTCGTGTTCTTCTTCCTTCTCTACTACTACCTCTCTTCTTGCTAGCCCAAGTACTCTTTGCTCAAGACTACCCACCCA ACCCCGGCTACTACCCTAGCTCGAGAGCTCCTTCCATCCCTTTTGATAGAAGGTATCGAAACCGTTGGGGTCCTCAGCACCAGAGGCTCGACCAAAATTT GCTAACCATCTGGCTAGACCGCTCGTCAGGAAGTGGATACCAATCACTTAAGCCATACAAATCTGGCTACTTTGGTGCTTCCATCAAGCTTCATCCGGGC TATACGGCTGGAGTCATCACATCTTTCTACCTATCAAACAACGAGGTTCATCCAGGAAATCACGACGAGATCGACATCGAGTTCTTGGGAACCACGCCCG GGAAGCCATACACATTGCAGACCAATGTGTACGTTAGGGGAAGTGGGGATAGGAACGTTGTAGGCAGAGAAGTGCAGTTCCATCTATGGTTTGATCCCAC CCAAGACTTCCACCACTATGCAATTTTGTGGGACCCTAATGAAATTATATTTTATGTGGACGATGTGCCAATCAGGAGGTATCCAAAAAAAAGTGAGGAA ACATTCCCACAAAGACCAATGTGGGTCTACGGATCGATTTGGGATGCATCCGACTGGGCCACTGAGCACGGTAGGTACAGAGCTGACTACAACTACCAAC CTTTCATTGGCCGGTATAGGGACTTCAAGATCGGTGGCTGCACTGCTTTTGCTAAACCAGAGTGTCAGCCAACACCTGGGTCTCCAACGGGCTACGGAAG GTTAAGCCAGCAACAAATGGTGTCCATGTCTTGGGTGCAGAGGAACCACATGGTGTATGACTATTGCAATGACCCACAAAGGGACCACACCCACACTCCT GAGTGCTAG
AA sequence Show only first row Show all	>Lus10016144 pacid=23171810 polypeptide=Lus10016144 locus=Lus10016144.g ID=Lus10016144.BGIv1.0 annot-version=v1.0 MATTSNTTRVLLPSLLLPLFLLAQVLFAQDYPPNPGYYPSSRAPSIPFDRRYRNRWGPQHQRLDQNLLTIWLDRSSGSGYQSLKPYKSGYFGASIKLHPG YTAGVITSFYLSNNEVHPGNHDEIDIEFLGTTPGKPYTLQTNVYVRGSGDRNVVGREVQFHLWFDPTQDFHHYAILWDPNEIIFYVDDVPIRRYPKKSEE TFPQRPMWVYGSIWDASDWATEHGRYRADYNYQPFIGRYRDFKIGGCTAFAKPECQPTPGSPTGYGRLSQQQMVSMSWVQRNHMVYDYCNDPQRDHTHTP EC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10016144 [exp]	0	1
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10035932 [exp]	6.9	0.9252
AT4G12010			Disease resistance protein (TI...		Lus10004075 [exp]	7.3	0.8986
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10015127 [exp]	13.9	0.9140
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10036177 [exp]	14.3	0.9120
AT1G22440			Zinc-binding alcohol dehydroge...		Lus10000624 [exp]	15.4	0.8528
AT2G16750			Protein kinase protein with ad...		Lus10019787 [exp]	16.2	0.9089
AT1G29970		RPL18AA	60S ribosomal protein L18A-1 (...		Lus10005572 [exp]	17.8	0.8414
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10010509 [exp]	18.8	0.9057
AT1G02460			Pectin lyase-like superfamily ...		Lus10038059 [exp]	19.6	0.9042
AT1G17710		AtPEPC1	Arabidopsis thaliana phosphoet...		Lus10015634 [exp]	21.0	0.8968

Compare expression of checked genes

Lus10016144 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.