Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20550 225 / 2e-71 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G49390 209 / 3e-65 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G20400 207 / 9e-65 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G54000 197 / 7e-61 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G08640 146 / 3e-41 ATFLS1, FLS flavonol synthase 1 (.1.2) AT5G05600 144 / 4e-40 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G25300 140 / 1e-38 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT4G22880 138 / 5e-38 TT18, TDS4, ANS, LDOX TANNIN DEFICIENT SEED 4, ANTHOCYANIDIN SYNTHASE, leucoanthocyanidin dioxygenase (.1.2) AT2G38240 137 / 1e-37 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G21420 137 / 1e-37 LBO1 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039975 [exp] 209 / 2e-65 AT1G49390 309 / 5e-104 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10008826 [exp] 207 / 1e-64 AT1G49390 298 / 1e-99 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10008824 [exp] 204 / 2e-63 AT1G49390 410 / 2e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022292 [exp] 151 / 9e-43 AT1G17020 449 / 5e-159 senescence-related gene 1 (.1) Lus10028068 [exp] 148 / 5e-42 AT5G08640 429 / 1e-151 flavonol synthase 1 (.1.2) Lus10025620 [exp] 145 / 1e-40 AT5G08640 424 / 2e-149 flavonol synthase 1 (.1.2) Lus10006518 [exp] 145 / 1e-40 AT3G21420 523 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10025619 [exp] 140 / 8e-39 AT5G08640 349 / 5e-120 flavonol synthase 1 (.1.2) Lus10026173 [exp] 140 / 2e-38 AT1G17020 443 / 5e-156 senescence-related gene 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G062500 [exp] 236 / 7e-76 AT5G20400 432 / 2e-152 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.018G121700 [exp] 235 / 2e-75 AT5G20400 426 / 8e-150 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.018G121800 [exp] 228 / 2e-72 AT5G54000 407 / 2e-142 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.003G030400 [exp] 207 / 1e-64 AT1G49390 320 / 2e-108 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.003G030451 [exp] 202 / 9e-63 AT1G49390 321 / 1e-108 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.003G030500 [exp] 202 / 9e-63 AT1G49390 321 / 1e-108 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.019G014454 [exp] 156 / 4e-45 AT5G08640 454 / 1e-161 flavonol synthase 1 (.1.2) Potri.004G139600 [exp] 143 / 5e-40 AT5G08640 470 / 7e-168 flavonol synthase 1 (.1.2) Potri.009G022800 [exp] 143 / 7e-40 AT1G17020 302 / 6e-101 senescence-related gene 1 (.1) Potri.010G023600 [exp] 141 / 4e-39 AT3G21420 511 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10016145 pacid=23171808 polypeptide=Lus10016145 locus=Lus10016145.g ID=Lus10016145.BGIv1.0 annot-version=v1.0 ATGGTGAGGAGAGACGAGATAGCGCAAGAACTGGCCAACGGCGGCGTAGATCCGCCAGCGAAGTTCCTGCAAAATGCGGCCATTGATCCGGCGGAAGAAG TCGTCGAAGGCGGCGGCTCTCTTCCACAAGTTGACATTTCACTCCTCACTTCTCCTTCTCCTTCCATAGCCATGGCTGAAGTCATGAAGCTTCACTCAGC TTTCTCCACCTTCGGCTGCTGCATGGTAGTGAATCATGGAATGTCGAAGGAGTTGATGAAGAGTGTTCGAGGAATTTGCAACGATTTCTTCAAACTACCA ATGGAAGAGAAGTCAAAGTATGCAAGACCAACTAATGATTGGCAAGGCTATGGTTCCGAGATACGACCAGACGACTATGAAAGCCACGACTGGAGTGATC GACTCCAGTTCAAGTTAGGTCCTGAGAGCCAGAGAGACTTCAAGTTCTGGCCAGCTCACAACCCACCCAACTTCAGTTGGAAGAGAAGAGCTTCGGATGA GGTTGGTGAGCATCGTTGGCTTGCGAGGTTCAACTTGTACCCAAAGTGCTCGAGGCCCGACCGGGTTCTTGGTGTCGATGCTCATAGCGATGGCTCGATC TTCACCATCCTGCTCCTCGATGTCGAAGTTGATGGGTACCAGCTCTTTCGGGATGGTCGATGGGTCAAGGTTCCTTTCGAGTCCGAGGATGGGATCCTTA TCCAAGTTGGCGATCAAGGAGAGATAATAAGCAATGGGGAGTTCAAGTCTCCGTTGCATCGGGTGGCGGTGAACAAAGAGAAGGAAAGGAAGTCCGTACT TTTCACAGGCTTGGCCGAGAAAGACAAGGTTATCGGACCGGTGAAAGCCCTCGTGAACAAGACGAATCCGCCCAAGTACAAGAATGTCGTGAACTACGAG CGGATCTATGTCCAGAACACGAATTCCCGGACCTTGATCGAATCCTTGAAGATTTGA
AA sequence Show only first row Show all	>Lus10016145 pacid=23171808 polypeptide=Lus10016145 locus=Lus10016145.g ID=Lus10016145.BGIv1.0 annot-version=v1.0 MVRRDEIAQELANGGVDPPAKFLQNAAIDPAEEVVEGGGSLPQVDISLLTSPSPSIAMAEVMKLHSAFSTFGCCMVVNHGMSKELMKSVRGICNDFFKLP MEEKSKYARPTNDWQGYGSEIRPDDYESHDWSDRLQFKLGPESQRDFKFWPAHNPPNFSWKRRASDEVGEHRWLARFNLYPKCSRPDRVLGVDAHSDGSI FTILLLDVEVDGYQLFRDGRWVKVPFESEDGILIQVGDQGEIISNGEFKSPLHRVAVNKEKERKSVLFTGLAEKDKVIGPVKALVNKTNPPKYKNVVNYE RIYVQNTNSRTLIESLKI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20550			2-oxoglutarate (2OG) and Fe(II...		Lus10016145 [exp]	0	1
AT4G30320			CAP (Cysteine-rich secretory p...		Lus10015522 [exp]	1.4	0.8801
AT3G59650			mitochondrial ribosomal protei...		Lus10022178 [exp]	3.5	0.8264
AT1G68630			PLAC8 family protein (.1)		Lus10009036 [exp]	3.9	0.8840
AT1G62935			unknown protein		Lus10009297 [exp]	7.3	0.8795
					Lus10004305 [exp]	7.5	0.7441
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Lus10028473 [exp]	8.9	0.8350
					Lus10002237 [exp]	10.9	0.8632
AT3G11480		BSMT1, ATBSMT1	S-adenosyl-L-methionine-depend...		Lus10032299 [exp]	12.0	0.8494
AT2G05920			Subtilase family protein (.1)		Lus10006689 [exp]	12.2	0.8695
AT1G80600		WIN1	HOPW1-1-interacting 1 (.1)		Lus10008025 [exp]	13.6	0.7260

Compare expression of checked genes

Lus10016145 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.