Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28130 216 / 1e-65 unknown protein AT3G10440 43 / 0.0003 Shugoshin C terminus (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021421 [exp] 495 / 2e-174 AT2G28130 430 / 6e-148 unknown protein Lus10021420 [exp] 117 / 1e-29 AT5G04320 78 / 1e-15 Shugoshin C terminus (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G006200 [exp] 278 / 3e-89 AT2G28130 417 / 3e-143 unknown protein Potri.009G006100 [exp] 50 / 2e-06 AT5G04320 86 / 1e-18 Shugoshin C terminus (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07557 [flax] [poplar] Shugoshin_C Shugoshin C terminus
Representative CDS sequence Show only first row Show all	>Lus10016147 pacid=23171830 polypeptide=Lus10016147 locus=Lus10016147.g ID=Lus10016147.BGIv1.0 annot-version=v1.0 ATGGTTTCTATGGGGAGCAGGAAGAAAGTGGTTGGTCTGGATGATCTGCTGACTGATTACTACAAGGAGAAGAGTAAAGTCATCGAGAGGGAGTCGAAAC GGGCAAAGGCATCGAAATACTATGACTCAGATGAGAGTGATGAAGAAGCTTTACTGTCCAAAACTATTGCGGATTGTCACTTCAAGGCATTGATATGTGT GTTGGTTTGGTTGCTGCAGATAGATGAAGTGGAATGCGGTGAAGAGAACTCCACTTGGGGTATGCAAGTTTTCGGAGAGAAGAAATCAGCACCACCTCTC GTCTTCCCCAAGCTTGGAAGTAACTCTATGTTGAAGTCTTTCATGAGCAACAAGCTGCATTCCATGGTGAAACACACTGTAGATGAAGGAGAAGGATTTT TTGAAGGATTACTTTTGAATGGCTGGCTCTCGGAATTGGTCGGTAGATGCGGTCGTTTAGATAAACCAATAGCTCAATGGACTTTTCATCTGACTCTTTC AGTGTTATATTCTTCGAAAGAGGAGCTCAGAACAGCTGCCTGTAACTTTTGGTGCTCCGTTGCTCAACTTGATCAGAAGGATAAGAAGCAGTCCAGTGGG ATTAAGTGGTTCCCAAGTTACACTGATCTTAAGTCAGCTCTTGAAATATACGGGTTTCGTTTAATCGTTCCGTTAGAGGGAGAGTCAGCAATTTCTGATA TGCACAATATAGCACCGCCTGATAGTATTCAAATGTGGATCAAGTTCATAACTGTCTGCTGTCAAGTAAGGTATCCTTCAGTTCTGAAAGCAGATCTTTC GTATTCGTTAGCTATCAGGCAGACTATTGTGCCAGTTCGGGCAAAGATCATCCTGATTCCTAAATTCCTGAGTGAAAGGTGTATCTTCTCATCGTCGGAG GCAGAAAGTTTACTTGACGTCATAATTCTCCTGTCTCTGGACCGTCAGCTCGAAGGAATCCTGGTACTTCTGTATGAAAGTGTGCAATCCGTCATCAATT ACTTTACAGAAGCAGAATGGCCCGAATCGTGTCTAAATGTTGCACGATCTCTTGCTTCCAGGCAATGCTTGAGAAGGCAGTCTGCTGCAGGGTTCGTCGA GTTCCATAAGAGTGAGCCAGAGAAGAACTTGCTTCAGATAGAAGCACATAGAGCTTCGATGGGGCGACCAGTACGAAGAGCTGCAGAGAAGGTATGCTCC TACAAAGAACCTTCACTTGTTCAGAAAATGCGGAGGCCAGTTTGA
AA sequence Show only first row Show all	>Lus10016147 pacid=23171830 polypeptide=Lus10016147 locus=Lus10016147.g ID=Lus10016147.BGIv1.0 annot-version=v1.0 MVSMGSRKKVVGLDDLLTDYYKEKSKVIERESKRAKASKYYDSDESDEEALLSKTIADCHFKALICVLVWLLQIDEVECGEENSTWGMQVFGEKKSAPPL VFPKLGSNSMLKSFMSNKLHSMVKHTVDEGEGFFEGLLLNGWLSELVGRCGRLDKPIAQWTFHLTLSVLYSSKEELRTAACNFWCSVAQLDQKDKKQSSG IKWFPSYTDLKSALEIYGFRLIVPLEGESAISDMHNIAPPDSIQMWIKFITVCCQVRYPSVLKADLSYSLAIRQTIVPVRAKIILIPKFLSERCIFSSSE AESLLDVIILLSLDRQLEGILVLLYESVQSVINYFTEAEWPESCLNVARSLASRQCLRRQSAAGFVEFHKSEPEKNLLQIEAHRASMGRPVRRAAEKVCS YKEPSLVQKMRRPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28130			unknown protein		Lus10016147 [exp]	0	1
AT5G26360			TCP-1/cpn60 chaperonin family ...		Lus10021150 [exp]	6.0	0.8752
AT1G67630		EMB2814, POLA2	EMBRYO DEFECTIVE 2814, DNA pol...		Lus10015820 [exp]	6.6	0.9080
AT5G67100		ICU2	INCURVATA2, DNA-directed DNA p...		Lus10009366 [exp]	7.9	0.9119
AT5G67240		SDN3	small RNA degrading nuclease 3...		Lus10019321 [exp]	8.7	0.8964
AT4G12740			HhH-GPD base excision DNA repa...		Lus10001182 [exp]	9.0	0.8692
AT4G21270		KATAP, ATK1	KINESIN-LIKE PROTEIN IN ARABI...		Lus10007629 [exp]	13.5	0.9067
AT2G33560		BUBR1	BUB1-related (BUB1: budding un...		Lus10013199 [exp]	16.6	0.8986
AT1G75150			unknown protein		Lus10010814 [exp]	20.1	0.8895
AT3G59670			unknown protein		Lus10027104 [exp]	22.1	0.8571
AT3G18524		ATMSH2, MSH2	MUTS homolog 2 (.1)		Lus10032469 [exp]	25.1	0.8890

Compare expression of checked genes

Lus10016147 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.