Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22930 84 / 2e-20 Protein of unknown function (DUF1635) (.1) AT2G28140 70 / 4e-15 Protein of unknown function (DUF1635) (.1) AT3G44940 62 / 4e-12 Protein of unknown function (DUF1635) (.1) AT2G28690 44 / 1e-05 Protein of unknown function (DUF1635) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021419 [exp] 166 / 8e-53 AT5G22930 182 / 6e-58 Protein of unknown function (DUF1635) (.1) Lus10038677 [exp] 49 / 3e-07 AT5G22930 121 / 2e-33 Protein of unknown function (DUF1635) (.1) Lus10005884 [exp] 48 / 4e-07 AT2G28690 185 / 2e-58 Protein of unknown function (DUF1635) (.1) Lus10037944 [exp] 48 / 5e-07 AT5G22930 131 / 3e-37 Protein of unknown function (DUF1635) (.1) Lus10040864 [exp] 48 / 7e-07 AT2G28690 197 / 2e-63 Protein of unknown function (DUF1635) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G006000 [exp] 96 / 8e-25 AT5G22930 134 / 3e-38 Protein of unknown function (DUF1635) (.1) Potri.004G216100 [exp] 85 / 1e-20 AT5G22930 140 / 8e-41 Protein of unknown function (DUF1635) (.1) Potri.008G032500 [exp] 48 / 5e-07 AT5G22930 75 / 5e-16 Protein of unknown function (DUF1635) (.1) Potri.006G256801 [exp] 46 / 2e-06 AT2G28690 162 / 1e-48 Protein of unknown function (DUF1635) (.1) Potri.009G027100 [exp] 46 / 3e-06 AT2G28690 156 / 3e-46 Protein of unknown function (DUF1635) (.1) Potri.001G235200 [exp] 45 / 4e-06 AT2G28690 166 / 3e-50 Protein of unknown function (DUF1635) (.1) Potri.008G010100 [exp] 44 / 1e-05 AT2G28690 147 / 4e-43 Protein of unknown function (DUF1635) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07795 [flax] [poplar] DUF1635 Protein of unknown function (DUF1635)
Representative CDS sequence Show only first row Show all	>Lus10016148 pacid=23171819 polypeptide=Lus10016148 locus=Lus10016148.g ID=Lus10016148.BGIv1.0 annot-version=v1.0 ATGGAAGAGCTAAGAAACTCACTGCTCTACACAACTCTGGAGCTCGAGCAAACCCGAATAGCAGCACAGGAGGAGCTCCAAAGGCGAGACGAGCAGCTGA TCCAGCTCAGGGAGCTTCTCGAAAGTGCGAAATCGGAAAGAGACGAACTTTCCGAGAAATGCCAGCGGCTCATGTTCGAAAATTTGCTGATTCACCACCA AATTCCTCCGGTAGTTCATCAAATCTCGTCGGGACTTTCCGGAATCGAGGATGTAGAGCCCAGATTGGGTATCGACTCAACGAACAACAATGGGTTCTCG TCCTTTTCGTCGTCCGATTGCGAGGAGAGCATCGTCTCCTCGCCGGAAACAGGGGAACCGCCGCTTCCGGCGCCGGAGAAGCCGCTGGCGGAGAAGGGGA AGCTTGCTGAGGGGGGGGGGCCAGAGAGTAGCTCTCCATTGATTGACCCACCTTTAGGTTTAATCCACCACTAA
AA sequence Show only first row Show all	>Lus10016148 pacid=23171819 polypeptide=Lus10016148 locus=Lus10016148.g ID=Lus10016148.BGIv1.0 annot-version=v1.0 MEELRNSLLYTTLELEQTRIAAQEELQRRDEQLIQLRELLESAKSERDELSEKCQRLMFENLLIHHQIPPVVHQISSGLSGIEDVEPRLGIDSTNNNGFS SFSSSDCEESIVSSPETGEPPLPAPEKPLAEKGKLAEGGGPESSSPLIDPPLGLIHH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22930			Protein of unknown function (D...		Lus10016148 [exp]	0	1
AT1G75390	bZIP	ATBZIP44	basic leucine-zipper 44 (.1.2)		Lus10024279 [exp]	4.7	0.7754
AT5G67470		ATFH6	ARABIDOPSIS FORMIN HOMOLOG 6, ...		Lus10025195 [exp]	5.0	0.7861
AT5G04770		CAT6, ATCAT6	ARABIDOPSIS THALIANA CATIONIC ...		Lus10000962 [exp]	6.5	0.7457
AT1G69850		NTL1, ATNRT1:2	nitrate transporter 1:2 (.1)		Lus10036710 [exp]	13.5	0.7637
AT2G22900			Galactosyl transferase GMA12/M...		Lus10019265 [exp]	19.5	0.7459
AT5G56440			F-box/RNI-like/FBD-like domain...		Lus10023425 [exp]	21.4	0.7399
AT5G50890			alpha/beta-Hydrolases superfam...		Lus10001506 [exp]	28.4	0.7470
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10027657 [exp]	28.5	0.7284
AT1G61670			Lung seven transmembrane recep...		Lus10025135 [exp]	28.8	0.6743
AT5G22930			Protein of unknown function (D...		Lus10021419 [exp]	31.5	0.7311

Compare expression of checked genes

Lus10016148 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.