Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08130 937 / 0 ATLIG1 DNA ligase 1 (.1) AT1G49250 770 / 0 ATP-dependent DNA ligase (.1) AT1G66730 473 / 2e-149 AtLIG6 DNA LIGASE 6 (.1) AT5G57160 98 / 1e-20 ATLIG4 DNA ligase IV (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021418 [exp] 1361 / 0 AT1G08130 1015 / 0.0 DNA ligase 1 (.1) Lus10017623 [exp] 504 / 7e-161 AT1G66730 1584 / 0.0 DNA LIGASE 6 (.1) Lus10020013 [exp] 76 / 1e-13 AT5G57160 1352 / 0.0 DNA ligase IV (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G005900 [exp] 979 / 0 AT1G08130 1073 / 0.0 DNA ligase 1 (.1) Potri.004G094200 [exp] 490 / 7e-156 AT1G66730 1656 / 0.0 DNA LIGASE 6 (.1) Potri.018G141900 [exp] 101 / 1e-21 AT5G57160 1372 / 0.0 DNA ligase IV (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF04679 [flax] [poplar] DNA_ligase_A_C ATP dependent DNA ligase C terminal region CL0078 [flax] [poplar] DNA_ligase PF01068 [flax] [poplar] DNA_ligase_A_M ATP dependent DNA ligase domain CL0078 [flax] [poplar] PF04675 [flax] [poplar] DNA_ligase_A_N DNA ligase N terminus
Representative CDS sequence Show only first row Show all	>Lus10016149 pacid=23171826 polypeptide=Lus10016149 locus=Lus10016149.g ID=Lus10016149.BGIv1.0 annot-version=v1.0 ATGCAAACTCTCCGTCAATCCTTCATCTCTCTCCTCTTATTCCCCGTCGCTTCTCTCCGCCGCCGCCCAATTTCCTTCCTCTCATCTCCCCTCTTCCCAA TCCCAAAACCCCTTTCTTCTTATCCCGTTTTCCTAAACCCTAAATCCCAAATGTCGAATCGCCCCAATGCATTCGACGTTCTTAAATCCAACGCCAAAGC CGCTTACAAGAAGAAAGCATCTCAGTCCCAGTCCTCTCCGTCGAAGAAGCGCAAGTCCCCGGAACCCGAAAACCCTAAACCCGTGCTGGGTCCGATCGAG GACGGGAAGCTACCGGAATCTGATAATCAGTCTCCGATTGAGCAGAAATCGGAGATTACGGCGGCCAAGGCTTCAAATGGTGGGACGAGTACGACGTCGT TTTTCTCCTCCTCCAAGAAAACGCGGAGTGAAGGAAAAGTGGAGGAACTGAAGGGAAAGGTTGGAGCTTTGAAGAAGAAGGCGAAAGAATTTGACCCTAA GAAAGTGGCGTGCTGGGAGAAAGGAGAGAAAATTCCGTTCATCTTTGTCTCGCTGGCGTTTGACATGATTGCGAATGAGAGTGGGAGGATTGTGATCACT GATATCGTGTGTAATATGCTGAGGACAGTTATGGAGACGACTCCCGACGATTTGCTTCCTGTTGTTTACTTGCTGGCGAACAAGATTGCTCCTGCTCATG AAGGGATTGAGCTTGGGATCGGGGAAGCGATCCTGATCAAAGCTTTGGCCCAGGCTTATTCCAAGATGGAGAGGGATGTTAAGAAGATGTACCAGGAAAT GGGAGATTTGGGGCTTGTTGCTAAAGCCAGCCGTAGGACTCAAAGGACCATGTCTCAGCCTGAGCAGTTAACCGTTTTGAAAGTTTTCGACACCTTCCGA TTGATTGCCAAGCAATCTGGTAAGGACAGCCAAGACAGCAAGAGGAAACATATAAAGGGACTTCTTGTGGCGGCCATCGACTGTGAGCCTCAGTATATTA TGCGGTTGCTTCAGGTTGGGGGGATTCGAAGTTGCGGATTGGTTTCTCGGAAGTTGCGTATTGGTTTCTCAGAGCAGACTCTTTTGGCTGCTTTGGGTCA GGCTTCTGTGTATATCGAGAACCATTCTAAGCCGCCTTCACATGCAGTGCAAATTGTCAAGGGAGTCTACTCTGTCCTTCCTGTATATGACATAATTGTC CCAGCGCTTCTCAATAACGGTGTATGGAATCTTTCCAAGACATGCAACCTTATGCCTGGTGTTCCTGTTGCACCTATGCTCGCCAAATCGACTAAGGCTG TTTCTGAGATAGTAAATAAATTCCAGGATATAGAGTTTACTTGTGAATACAAGTACGATGGAGAACGTGCTCAGATACATTATACTGAGGATGGTTCAGT TGAGATATACAGTCGCAATGCTGAGCGAAACACTGGAAAATTTCCTGATGTCGTGGCTACGATTTCAAGGCTGAAGAAGTCTTCTGTCCAATCGTTTATT CTGGACTGTGAACTGGTTGCCTATGACCGAGAAAAGAAGAAGATTCTTCCCTTTCAGATCCTTAGTACTCGTGCCCGCAAAAATGTGGTCGTCAGTGATA TAAAGATTGATGTATGCATATTTGCTTTTGACATATTGTATCTTAATGGAGAACCACTTATTCAGGAACAACTGGAAGTTCGTCGAGAGCAGCTGTACAG TTCATTTGAGGTGGAACCTGGGTTTTTCCAGTATGCCACAGCATTAACATCTAACGACCTCGAGGAAATACAGAAATTTCTCAATGCAGCTGTTGATTCA AGTTCTGAGGGTTTGATAATCAAAACACTGAATAAAGATGCTACATATGAACCATCAAAACGATCACGGAACTGGCTAAAACTGAAGAAAGATTACATGG AAAGCCTTGGTGATTCATTTGATTTGGTACCTATCGGTGCTTTCCATGGAACTGGGAAGCGCACAGGATTCTATGGTGCTTTTCTCCTTGCTTGTTATGA CAATGACAAAGAGGAATATCAAACCATTTGTAAACTGGGTACGGGATTCAGCGAAGCACAACTAGAAGAGCATTCGACTAGACTCCGTTCTAAAGTGATT ACTGAACCTAAGTCATACTACAGGTTCGGAGAGAAGTTGAATCCTGATGTGTGGTTTGAGCCTTCTGAGGTTTGGGAGGTGAAAGCTGCAGATTTGACAA TCAGTCCGGTTCATTGTGCAGCCATTGGTGCTGTGGATCCTAATAAGGGTATTTCTCTTCGGTTCCCACGAATGTTACGAGTCAGAACAGACAAGGCTCC AGAGGCAGCTTCATCAGCAGAACAGGTGGCTGAGATGTACAATGCTCAAAAGCACAATCAGCCCAACCCTGATGCCGATGACGAAGATGATTGA
AA sequence Show only first row Show all	>Lus10016149 pacid=23171826 polypeptide=Lus10016149 locus=Lus10016149.g ID=Lus10016149.BGIv1.0 annot-version=v1.0 MQTLRQSFISLLLFPVASLRRRPISFLSSPLFPIPKPLSSYPVFLNPKSQMSNRPNAFDVLKSNAKAAYKKKASQSQSSPSKKRKSPEPENPKPVLGPIE DGKLPESDNQSPIEQKSEITAAKASNGGTSTTSFFSSSKKTRSEGKVEELKGKVGALKKKAKEFDPKKVACWEKGEKIPFIFVSLAFDMIANESGRIVIT DIVCNMLRTVMETTPDDLLPVVYLLANKIAPAHEGIELGIGEAILIKALAQAYSKMERDVKKMYQEMGDLGLVAKASRRTQRTMSQPEQLTVLKVFDTFR LIAKQSGKDSQDSKRKHIKGLLVAAIDCEPQYIMRLLQVGGIRSCGLVSRKLRIGFSEQTLLAALGQASVYIENHSKPPSHAVQIVKGVYSVLPVYDIIV PALLNNGVWNLSKTCNLMPGVPVAPMLAKSTKAVSEIVNKFQDIEFTCEYKYDGERAQIHYTEDGSVEIYSRNAERNTGKFPDVVATISRLKKSSVQSFI LDCELVAYDREKKKILPFQILSTRARKNVVVSDIKIDVCIFAFDILYLNGEPLIQEQLEVRREQLYSSFEVEPGFFQYATALTSNDLEEIQKFLNAAVDS SSEGLIIKTLNKDATYEPSKRSRNWLKLKKDYMESLGDSFDLVPIGAFHGTGKRTGFYGAFLLACYDNDKEEYQTICKLGTGFSEAQLEEHSTRLRSKVI TEPKSYYRFGEKLNPDVWFEPSEVWEVKAADLTISPVHCAAIGAVDPNKGISLRFPRMLRVRTDKAPEAASSAEQVAEMYNAQKHNQPNPDADDEDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08130		ATLIG1	DNA ligase 1 (.1)		Lus10016149 [exp]	0	1
AT4G21430		B160	Zinc finger, RING-type;Transcr...		Lus10006741 [exp]	2.0	0.9396
AT3G46960			RNA helicase, ATP-dependent, S...		Lus10017528 [exp]	2.2	0.9451
AT1G73970			unknown protein		Lus10000648 [exp]	3.5	0.9150
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10038858 [exp]	3.5	0.9287
AT1G50140			P-loop containing nucleoside t...		Lus10013429 [exp]	7.0	0.9224
AT5G17410			Spc97 / Spc98 family of spindl...		Lus10026855 [exp]	7.7	0.9044
AT3G20540		PolIB, POLGAMMA...	polymerase I B, polymerase gam...		Lus10019619 [exp]	8.4	0.9270
AT4G24270		EMB140	EMBRYO DEFECTIVE 140 (.1.2)		Lus10005168 [exp]	9.2	0.9259
AT5G65930		PKCBP, ZWI	POTATO KINESIN-LIKE CALMODULIN...		Lus10006064 [exp]	9.8	0.8985
AT3G23330			Tetratricopeptide repeat (TPR)...		Lus10024381 [exp]	10.2	0.9031

Compare expression of checked genes

Lus10016149 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.