Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28160 215 / 1e-67 bHLH ATFIT1, ATBHLH29, bHLH029, FIT1, ATBHLH029, FRU ARABIDOPSIS FE-DEFICIENCY INDUCED TRANSCRIPTION FACTOR 1, BASIC HELIX-LOOP-HELIX PROTEIN 29, FER-like regulator of iron uptake (.1) AT5G57150 91 / 3e-21 bHLH bHLH035 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT4G29930 84 / 7e-19 bHLH bHLH027 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT2G16910 84 / 8e-18 bHLH AMS, bHLH021 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G46510 71 / 2e-13 bHLH ATAIB, bHLH107, bHLH017, INU1, JAM1, MYL1 ABA-inducible BHLH-type transcription factor (.1) AT1G12860 68 / 2e-12 bHLH SCRM2, ICE2, bHLH033 SCREAM 2, INDUCER OF CBF EXPRESSION 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G10610 67 / 3e-12 bHLH bHLH090 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G26744 67 / 5e-12 bHLH SCRM, ATICE1, ICE1, bHLH116 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) AT1G01260 66 / 8e-12 bHLH bHLH013, INU4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT4G17880 64 / 5e-11 bHLH bHLH004, MYC4 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021416 [exp] 286 / 2e-97 AT2G28160 191 / 7e-61 ARABIDOPSIS FE-DEFICIENCY INDUCED TRANSCRIPTION FACTOR 1, BASIC HELIX-LOOP-HELIX PROTEIN 29, FER-like regulator of iron uptake (.1) Lus10006951 [exp] 84 / 1e-18 AT5G57150 243 / 2e-81 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10030880 [exp] 80 / 2e-16 AT2G16910 224 / 7e-69 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10030609 [exp] 73 / 4e-14 AT2G16910 239 / 1e-74 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10024871 [exp] 71 / 3e-13 AT4G16430 448 / 5e-155 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10018787 [exp] 71 / 3e-13 AT4G16430 447 / 8e-155 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10000037 [exp] 67 / 7e-13 AT4G17880 300 / 3e-99 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10030970 [exp] 68 / 2e-12 AT1G32640 630 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10036068 [exp] 66 / 2e-12 AT5G57150 79 / 3e-18 basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G005600 [exp] 210 / 2e-65 AT2G28160 236 / 8e-76 ARABIDOPSIS FE-DEFICIENCY INDUCED TRANSCRIPTION FACTOR 1, BASIC HELIX-LOOP-HELIX PROTEIN 29, FER-like regulator of iron uptake (.1) Potri.018G141600 [exp] 87 / 1e-19 AT5G57150 191 / 2e-60 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.006G074700 [exp] 86 / 3e-19 AT5G57150 175 / 2e-54 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.006G074900 [exp] 85 / 8e-19 AT5G57150 200 / 3e-64 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.018G141700 [exp] 84 / 1e-18 AT5G57150 205 / 4e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.009G136300 [exp] 86 / 3e-18 AT2G16910 461 / 1e-156 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.018G141800 [exp] 83 / 4e-18 AT5G57150 256 / 6e-86 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.006G074600 [exp] 82 / 1e-17 AT5G57150 168 / 3e-51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.018G141500 [exp] 79 / 6e-17 AT5G57150 214 / 1e-69 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.002G172101 [exp] 74 / 2e-14 AT1G01260 526 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10016151 pacid=23171792 polypeptide=Lus10016151 locus=Lus10016151.g ID=Lus10016151.BGIv1.0 annot-version=v1.0 ATGGAGAGCTTCAATGGAAACCAATCATTCAATCACAGCAATCTGGAGCTACTCGACTTCATCGACGACCTCAATTTCGACCAGTTCATCGACCTGATCC GCGGCGGGAATGAGGACGATCATGCCGGCGCCGGCACCGGGGGAGGATTCGACGCGGGCTACGACCTCATTAATGACTTTGGCGGAGGAGTAATGCAGCC GGTTGCTGGAGATTATTTTGCTGCTGGGGTCGTCCACGAGGGTTTGGTTGTTAGCTTCGAGAATTTCGCTCCGCCGCCAGAGGATTTGACGGCGGCGTAT TTTGGACCGGCGGTGGGAGGTGGCGGTGGCGGAGGAGACGAGGCTGACGATTATTATGATGATTATTGGAATGTTGATGGCGGGGAAGTCTCTTCCGGGA CGACGACGACGACAGGGATGACGGAGGTTCCGGTGGGGGAGCCAAAGCGGCGGAAAGCTGACCGGTCGAAGACTTTGGTGTCGGAGAGGCGGCGGCGGGG GAGTATGAAAGAGAAGCTTTATGCTCTTAGATCTTTGGTTCCCAACATCACTAAGATGGATAAGGCGTCGATCATTGGCGATGCGGTGTCTTACGTGCAA GATCTTCAACTTCGATCGAAGAAGCTACAATCTGAAATTGCTGGACTAGAGGCATCATTACTAGCTAATGATGCACAACAAAATTCCCAATTTGGAGGAC CAAACGAATATTTTTATACGCATAAGCAGATCGATGTCTATCAAGTAGAGGAAAGCGGGTACTTTGTGCGATTGGTATGCAACAAAGGGGGAAATGCTGC CGTTTCGCTTTATAAGGCGCTCGAGTCGCTTGCGAATTTCACTGTTCAGAGCATGAATTTGAACTCTTCGCCTCCCGACAAATTCATATTCACTTTTAAT TTACTAGTAGTTAGAGAAATCCAGCAACAGCAACACATCAACTTGCCGAACTTGAAGTTATGGGTGACTAGTGCATTGTTGAACCAAGGATTTGAGCTTC TAACCTTGTGA
AA sequence Show only first row Show all	>Lus10016151 pacid=23171792 polypeptide=Lus10016151 locus=Lus10016151.g ID=Lus10016151.BGIv1.0 annot-version=v1.0 MESFNGNQSFNHSNLELLDFIDDLNFDQFIDLIRGGNEDDHAGAGTGGGFDAGYDLINDFGGGVMQPVAGDYFAAGVVHEGLVVSFENFAPPPEDLTAAY FGPAVGGGGGGGDEADDYYDDYWNVDGGEVSSGTTTTTGMTEVPVGEPKRRKADRSKTLVSERRRRGSMKEKLYALRSLVPNITKMDKASIIGDAVSYVQ DLQLRSKKLQSEIAGLEASLLANDAQQNSQFGGPNEYFYTHKQIDVYQVEESGYFVRLVCNKGGNAAVSLYKALESLANFTVQSMNLNSSPPDKFIFTFN LLVVREIQQQQHINLPNLKLWVTSALLNQGFELLTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28160	bHLH	ATFIT1, ATBHLH2...	ARABIDOPSIS FE-DEFICIENCY INDU...		Lus10016151 [exp]	0	1
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10036177 [exp]	2.0	0.9666
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10015127 [exp]	4.2	0.9614
AT5G63180			Pectin lyase-like superfamily ...		Lus10036946 [exp]	9.2	0.9503
AT1G17710		AtPEPC1	Arabidopsis thaliana phosphoet...		Lus10015634 [exp]	9.8	0.9379
AT1G75030		ATLP-3	thaumatin-like protein 3 (.1)		Lus10032726 [exp]	9.8	0.9509
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10002551 [exp]	10.4	0.9591
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Lus10001752 [exp]	11.5	0.9583
AT1G06980			unknown protein		Lus10026407 [exp]	12.2	0.9450
AT4G05030			Copper transport protein famil...		Lus10016059 [exp]	12.7	0.8558
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10031377 [exp]	14.3	0.9511

Compare expression of checked genes

Lus10016151 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.