Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44900 368 / 2e-115 ATCHX4 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) AT5G22900 360 / 1e-112 ATCHX3 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) AT2G13620 347 / 1e-107 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT5G22910 341 / 3e-105 ATCHX9 cation/H+ exchanger 9, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 9, cation/H+ exchanger 9 (.1) AT2G28180 335 / 2e-102 CHX08, ATCHX8 CATION/H+ EXCHANGER 8, Cation/hydrogen exchanger family protein (.1) AT3G44930 329 / 3e-101 ATCHX10 cation/H+ exchanger 10, cation/H+ exchanger 10, cation/H+ exchanger 10 (.1) AT1G08140 318 / 1e-96 ATCHX6a cation/H+ exchanger 6A, cation/H+ exchanger 6A, cation/H+ exchanger 6A (.1) AT1G08150 318 / 2e-96 ATCHX5 CATION/H+ EXCHANGER 5, Cation/hydrogen exchanger family protein (.1) AT3G44910 298 / 1e-89 ATCHX12 cation/H+ exchanger 12, cation/H+ exchanger 12 (.1) AT2G28170 292 / 3e-87 ATCHX7 CATION/H+ EXCHANGER 7, Cation/hydrogen exchanger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016153 [exp] 932 / 0 AT3G44900 434 / 2e-140 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10021412 [exp] 913 / 0 AT5G22900 422 / 5e-136 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10021414 [exp] 895 / 0 AT3G44900 274 / 6e-82 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10021413 [exp] 871 / 0 AT2G13620 399 / 7e-127 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10037374 [exp] 600 / 0 AT3G44900 502 / 8e-167 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10041344 [exp] 598 / 0 AT5G22900 511 / 4e-170 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10043128 [exp] 383 / 3e-121 AT3G44900 540 / 0.0 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10030013 [exp] 339 / 4e-104 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10035312 [exp] 334 / 6e-102 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G176400 [exp] 380 / 2e-120 AT3G44900 442 / 8e-144 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Potri.018G098300 [exp] 373 / 9e-118 AT5G22900 470 / 3e-154 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.007G105200 [exp] 358 / 1e-111 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.006G176800 [exp] 314 / 1e-96 AT5G22900 371 / 1e-117 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.018G098600 [exp] 316 / 5e-96 AT3G44900 388 / 6e-123 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Potri.019G123700 [exp] 288 / 2e-85 AT2G13620 536 / 4e-179 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.016G127800 [exp] 281 / 4e-83 AT5G01680 436 / 6e-142 cation/H+ exchanger 26, ARABIDOPSIS THALIANA CATION/HYDROGEN EXCHANGER 26, cation/H+ exchanger 26 (.1) Potri.007G099000 [exp] 281 / 4e-83 AT5G22900 385 / 1e-121 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.019G123800 [exp] 278 / 5e-82 AT2G13620 443 / 5e-144 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.010G183000 [exp] 269 / 2e-78 AT2G13620 474 / 8e-156 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF00999 [flax] [poplar] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Lus10016152 pacid=23171790 polypeptide=Lus10016152 locus=Lus10016152.g ID=Lus10016152.BGIv1.0 annot-version=v1.0 ATGCCAACAACGATCGAGCCGCCGGCTATCACCTGGCAAGATGAAAGAGTTTGTTATGCTTTCCCGACAAGGATGACTTCGGGAGTTCTTTCAATCAACG ACCCTTTCTTGGTTGCATTGTCTCTCACGGGAGTCATTCTGGGGCCAACCATGTTGGGGAGAACAGAGTTCTTCAGGAACGAGTTTTTCCCACACAACTC ACAGAATATATTGGAAATTGTAGCATTCATCGGATACGCCACCTTCATGTTCTTGGTCGGGGTGAAAATGGACGTGTCGACGGTGATGAACTCCGGCATG AAAGTCATGACGATCGGTTTAGCTGCCTTGATCTTGCCTTTGGTCTTCGGTTTAGCCGCCCAACAATCAAAAATGCGTAGCGCCGAGAGCAAATATGTCG TCTCCCAAATCTTCGGGGTCACCGGAATCCAGGCACTCACCACCTTTGATGTTGTCTCGCAGCTCCTCGGCGAGCTCAACCTCACGAACTTGGAGATTGG CCGATTCGCCTTGTCCGCCGCCTTGGTTACCGGATCGTGCGGCTCGTTCCTTCAGCTTTGCTCCTCAGCCTTAGCTTCAAACCTAGTAATCGAGAGACGG TTATTTAACATAGCAGGAATCGCCTTCCTTATTATAATTGCATGGTTCGCCATTGGTCCCGCAATGTTTAGCCTCGTGATAAAGAGGACTCCGGCGGGAG AACGTGTGAACCCAATTTGGATCATCATGATCCTGGCAATGGCGACGACTTACCAAATCCTCTTCGACGTATTTAGGCAGCCTTTCATTATTGGTCCTTT CGTCTTCGGGCTCCTTGCTATTCCTCAAGCGCCGCCGTTGGGTTCTTCATTGGTGGAAGCTTTGGAGTCAGTTCCCCAGCATGTGTTATTTCCGGTGTTT GTCGCTATGACTGTGATGAAAGCAGATATGACCTTCGTGTTTACGGATTTCGATAACAAAGCTTACTTTGTCGCTCTCATCTACTGGACCGCACTTCTCA AGTTTGTTGCCTGCTTGTTTCTTGCCCTCCCATGGATGCCTGCGCTCGACTCTGCTGTGCTCTCTCTGATCATGAGCTCGAAGGTCGTTGTCGATATCTC TACTCATGCATACATGCGAGATGTTCGGAAACTACCGATAGAGATATACTCACTGTTCATCTTCGCCATCATCGTAAACGCCACGGTGATCCCTATCCTG CTGGCCGTTCTCTACGAGCCGTCGAGGAGGTACGCCAGCTACCATTCGAGGAACATCTTTGTGCTGAAGCCCTTCACCGAGCTTCGAATCCTCGCTTGCA TTCACAAGCCTCACCATGTTGTATCAGTGACAAAACTGCTCGACACTTTGCGTCAAACAGAGGAGAGTGCGGTGGCTCTCTATGTAATCCAATTTCTTGA GCAGATCGGCCATACCACGCCCGTGTTCATATCCCACCAGAAGCAGAAGAAATCATCGTCAGCGGTTTTGGACAACTCCTCTGCCTCGGCCTCCGTTGAC ATCATGTTCGCCTTCGGTCAGTACGAAAGGAGGAACATTGGGTTTACATCGGTCCAGAGCTTCACTTCGATATCACAGTACAAGATGATGCAGGAAGACA TCTTCACGCTCGCACTCGACAAGCTAGTCTCCTTAATACTAATCCCTTTCCATCGACAGTGGTTGATGGATGGGGGCTTTGAGTCTGAGAACAATGTACT CGGAGCGCTTAATAGGAGGATCCTCGATACAGCTCCTTGCTCTGTGGGGATCCTCTACGACCACGGGAACTCAAAGCCACAAGACACTTGTAGTGTAGCC GCAGCCGAGGCACAATACATGGATGCATTCTCGGGAGCATCATCGCTTGCACCATCAATCCATTCGGTCTGCATGAACTACCTAGGCGGTCGGGATGATC ACGAGGCCATAAGCCTAGCCAAGCGGATGGCGAACGACCCGTGTGTCCACTTGACCATAATGCATGTGCTTAGTGAAGAATCTCACGCTTCTGAGGTCGA AGGCAGCCTAGTGTTGAAAGGTGTTCTGCAGGAAACTGCAGAACAGCTCAACGTGCACTACCTCGAGAAAGTCGTGAGTGATGGAACCGATACCGGAAGG GTGGTTTCTTCAGTAGCCGGTCAGTACGATCTCTTCGTGGTCGGGAGGAGATCGGACATTGACATGGAATCGCGTCAGACCGCAGGGCTGGCGAACTGGA GCGAGTTTCCGGAACTCGGAGCCGTCGGAGACCTACTTGCCTCCAAAGATATCCACACCAGAGGCTCTGTATTAGTGGTGCAACAGCAAAAGAAGGTCAA GTAA
AA sequence Show only first row Show all	>Lus10016152 pacid=23171790 polypeptide=Lus10016152 locus=Lus10016152.g ID=Lus10016152.BGIv1.0 annot-version=v1.0 MPTTIEPPAITWQDERVCYAFPTRMTSGVLSINDPFLVALSLTGVILGPTMLGRTEFFRNEFFPHNSQNILEIVAFIGYATFMFLVGVKMDVSTVMNSGM KVMTIGLAALILPLVFGLAAQQSKMRSAESKYVVSQIFGVTGIQALTTFDVVSQLLGELNLTNLEIGRFALSAALVTGSCGSFLQLCSSALASNLVIERR LFNIAGIAFLIIIAWFAIGPAMFSLVIKRTPAGERVNPIWIIMILAMATTYQILFDVFRQPFIIGPFVFGLLAIPQAPPLGSSLVEALESVPQHVLFPVF VAMTVMKADMTFVFTDFDNKAYFVALIYWTALLKFVACLFLALPWMPALDSAVLSLIMSSKVVVDISTHAYMRDVRKLPIEIYSLFIFAIIVNATVIPIL LAVLYEPSRRYASYHSRNIFVLKPFTELRILACIHKPHHVVSVTKLLDTLRQTEESAVALYVIQFLEQIGHTTPVFISHQKQKKSSSAVLDNSSASASVD IMFAFGQYERRNIGFTSVQSFTSISQYKMMQEDIFTLALDKLVSLILIPFHRQWLMDGGFESENNVLGALNRRILDTAPCSVGILYDHGNSKPQDTCSVA AAEAQYMDAFSGASSLAPSIHSVCMNYLGGRDDHEAISLAKRMANDPCVHLTIMHVLSEESHASEVEGSLVLKGVLQETAEQLNVHYLEKVVSDGTDTGR VVSSVAGQYDLFVVGRRSDIDMESRQTAGLANWSEFPELGAVGDLLASKDIHTRGSVLVVQQQKKVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Lus10016152 [exp]	0	1

Compare expression of checked genes

Lus10016152 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.