Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021411 [exp] 1248 / 0 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G005300 [exp] 766 / 0 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10220 [flax] [poplar] Smg8_Smg9 Smg8_Smg9
Representative CDS sequence Show only first row Show all	>Lus10016154 pacid=23171857 polypeptide=Lus10016154 locus=Lus10016154.g ID=Lus10016154.BGIv1.0 annot-version=v1.0 ATGGACTCGATCAACCCTCCACCCCTTCGGGTCCTCGCCCGCCCACCACCTTCTCGAGCTCCAACCTCAACCGGACCCTCCCGCCCTCCTCCTCGCCCCG TTCCCCCCGCTTCGCCGGAGCCCCAGCCTCCTCCTCCTCCGCCGACGAACTCCCTTCCTTTACAGTCTCAGACTCGATCCTCTGGCGGCGGCGTAACCGT GGTGGGTTTCGTCTCCCGCAACTCGGACCACTCCTCCCAGCTCATAAACCGGGTAATCGATTCCAAAGTGTTCGGGTCGGGTAATCTGGACCGGGTCTTG ACCGTCGAGAGTGAGGAAGTTGGGGATTGGTTTAGTCGGAGGAGGATCAGTTACTATCACGATGAGGAGAGAGGGATGCTGTTCTTGCAGTTCCGCGAGT CCCGATCGGGTTTGGATGAGTCCGAGCTGGAGGATCTTCAGGGTTTGCTCTTCATGTTCTCTGTCTGCCATGAGATCATTTACATTATGGAAGGTTCACG AGTTGATACGCATATCTTCAGTAAGTTAAGAGTGTTACAAGGAGCCAAGCATGCATTGGTTCCATATTTCAAGTCGAGGAGTTCATGGAGGGGTCATCAA GGTTCCAGCTCTTCTATGGCAGCATCATCGACTCCTTTGCCACGTGGTAGAAATGGTGGTGGCATGAGTCGAAATGCTTCTTCGTCTGTCTCTCTAATGT CAGGCTCAGGATCATATAACTCGTTGTATCCTGGATGTTGTACTCCGGTTATACTGTTTGTCTTTGTTGATGATTTTCCTGAGGGGTTGAATGGTAGTTT AAACGTGGAGGAGTCTACAGATGCTTCTCGGTCAAGCTTGCCAACAAAAGGTTCTGGTTCAGTTGTTGTACTGGCGCGTCCTCCTCCGGTTAAATCTGAA GGAGGCGTTAGGAAGAAAATACAGTCATCTATAGAAGCACAGATTCGTTTTTTCATAAAGAAGTGTCGGGTTCTTTTAGGTTCTGAAGTTGGTCATGGTG GTTCTAGAGGCGGTGAAGGTGGAGGTGGAGGTGTTTCGAGCTCAGCACCATTGTTTTCGCTTGATGCATCAAGGGCAGTTGTGCTGCTAGACAGGTGTAC CATTCAGGGAGTCGAATCTCTGGATTTCGCTACCAAATTGGTGGATGAAGTTTTAAATGGGAAAGCATCACCGGATTCTCTCTTGCTTGAAAGTAATGTC CAAAGTGGGAACAAAGAAGATGTTTCATTGATCAAGGAGTTTCTACTGAGGCAGTCTGATATTCTAAGAGGTAGAGGAGGATTTGTAGCTAAAAAACCCA CAGGGCTAAATCCAAAATTCACAACGTCATGGTGTGAAAGAGCTCTTCCAACTGCCAAGGATATTTATTTGCGGGACTTGCCTCCTTGTTACCCAACTTC AGTACACGAGACCCATCTTGCAAATGCTTTGCGAGGTTTTTACTCAATGGTCAGGGGCCCTGCAGTGGAGACGTTTGCCAAAAGACTGGAAGATGAATGC ACAAATGTATGGAAATCCAGTAGGCAACTATGTGATGTTGTTAGTTTGACTGGGAAACCATGCATGCACCAAAGGCATGATGATGTTAGTTCCAGCCAGA CACTAACAGAAGGTGCAGCAAAGTCGCACTGTAGCGGATACTTTTTCCTTCACGCATGTGCGTGTGGCCGTTCTCGTCAACTACGTCCTGATCCGTTTTC TTTCGAGTTCGCAAATGCTTCGAATTGCTTTCCAGATTGTGAGAAAGGCCTTTCTTTGGTGCAATTACCGGTTCAACCATCCTCTTGGACTCTGATTCGT GTTGGAGGAGCAAGATACTATGAGCCTTCTAAGGGTTTAATCCAGAGTGGGTTTTCCGTCACACATAAGTTTCTGTCAAGGTGGATTATCTTGCTTGAGA AACCGTCTAGTACTTCTCAATTAGGTTCTGTGTCTAGACATATGGTGCAACCACAGTTAGATCTAAATTCTGAGGTGGATAGAAAGAAAGTTGATGATAC ACAGTTGTTTTCCGCAGAAACCCAGACCAGGAATTCCAATCATACAAAACAGTTCGAAAATGGAAGATCTGATGAAAAGAAGATTAGCTTTGGTTCGGGT CTTCCAAATCTTACAATGAGAAAACCATTTTCTGAAGTGGTGGCAGGATCATCAACCAGAGATTCAGGTTTCCCTCCTCTTCAGCACAGGAGGTATCCTA CAACAGTATCAGACAAATCTATCCTACAAAACAAGTCTAGAGATTCAACTACAGAACAGGTTCATGGATCTCAGAAATCTGAAGGTGTTTCATCATCCCT GAAATTTTCAAAAGGACCCTCTTCTGTTTCTAGTCCCAGTGGTGACCCTTTACTAAGAATAGGAAGTAATGTAGTTCGTATGAGCATTAATAGCGGGGTA GTAACCAAATCAAATCCTGTGGTGAAGCATGCAGTTGTTTATTTAGGTTTGGAGCACGAATGTCCCTATGGCCATCGTTTTCTTCTGAATGAAGATCATC TCAATGAGATAGGATCTGCATACTCTATGCAGAAAGAATCTAATGTGTCCAATGGGGAAACGTCAAATCGAGATCCAACTGTTCCTTCTAGCTCGGGTTG GAAGGGTGGCCGTGGTAAAGTTTTTCGGAATTCCGGAACTATGAATGTCACTACTGGGAATAGAATGAGAAATGCAGAGAAGTCAAAAGAGATTAACAGG ATTAATCACCTCTCTGGTGCTGGTAGTGGCCAAAGTCAGAGGGCAATCAATGCTTCAGTAGACCCTAACTGTGTGAAAGATCTTGGCATGAACCTTCAAT CTCTTAGCATGGATGACACTGGAAGTTTATCTTCCATGTTGAATAGAAATATACCACTTTTCATGAACTGTCCATATTGTCGGCTCTCCAAGGGTAAGAA GGATCCGAAGATCAATTTCGCTGGCACAATCTCTCAACTCCAGAGGATCTTTCTGGTCACACCTCCATTTCCGGCTGTTTTAGCTGTAAGCCCTGTTATC CAGTTCGAGGCTTCGTGCCTTCCACCATCTGTTGTAGACCGGGAGCAGAAACTGCAGTTCACCATTGGTAGCCAAGTCGTTCTGCCATCAGAAAGTTTCC TCACTCTCCGACTTCCATTTATTTACGGTGTCCAGCTGGAGGATGGACGTCAGCATCCTCTTGGTGCTTTTGAGCATCAACCCGAGACCACTGCCTGGAT TGTAAAGGGCACCACATTGCATGTCGTTTCTAAGCAAAACAATATTCCCCAGGAATCACAGACATAA
AA sequence Show only first row Show all	>Lus10016154 pacid=23171857 polypeptide=Lus10016154 locus=Lus10016154.g ID=Lus10016154.BGIv1.0 annot-version=v1.0 MDSINPPPLRVLARPPPSRAPTSTGPSRPPPRPVPPASPEPQPPPPPPTNSLPLQSQTRSSGGGVTVVGFVSRNSDHSSQLINRVIDSKVFGSGNLDRVL TVESEEVGDWFSRRRISYYHDEERGMLFLQFRESRSGLDESELEDLQGLLFMFSVCHEIIYIMEGSRVDTHIFSKLRVLQGAKHALVPYFKSRSSWRGHQ GSSSSMAASSTPLPRGRNGGGMSRNASSSVSLMSGSGSYNSLYPGCCTPVILFVFVDDFPEGLNGSLNVEESTDASRSSLPTKGSGSVVVLARPPPVKSE GGVRKKIQSSIEAQIRFFIKKCRVLLGSEVGHGGSRGGEGGGGGVSSSAPLFSLDASRAVVLLDRCTIQGVESLDFATKLVDEVLNGKASPDSLLLESNV QSGNKEDVSLIKEFLLRQSDILRGRGGFVAKKPTGLNPKFTTSWCERALPTAKDIYLRDLPPCYPTSVHETHLANALRGFYSMVRGPAVETFAKRLEDEC TNVWKSSRQLCDVVSLTGKPCMHQRHDDVSSSQTLTEGAAKSHCSGYFFLHACACGRSRQLRPDPFSFEFANASNCFPDCEKGLSLVQLPVQPSSWTLIR VGGARYYEPSKGLIQSGFSVTHKFLSRWIILLEKPSSTSQLGSVSRHMVQPQLDLNSEVDRKKVDDTQLFSAETQTRNSNHTKQFENGRSDEKKISFGSG LPNLTMRKPFSEVVAGSSTRDSGFPPLQHRRYPTTVSDKSILQNKSRDSTTEQVHGSQKSEGVSSSLKFSKGPSSVSSPSGDPLLRIGSNVVRMSINSGV VTKSNPVVKHAVVYLGLEHECPYGHRFLLNEDHLNEIGSAYSMQKESNVSNGETSNRDPTVPSSSGWKGGRGKVFRNSGTMNVTTGNRMRNAEKSKEINR INHLSGAGSGQSQRAINASVDPNCVKDLGMNLQSLSMDDTGSLSSMLNRNIPLFMNCPYCRLSKGKKDPKINFAGTISQLQRIFLVTPPFPAVLAVSPVI QFEASCLPPSVVDREQKLQFTIGSQVVLPSESFLTLRLPFIYGVQLEDGRQHPLGAFEHQPETTAWIVKGTTLHVVSKQNNIPQESQT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10016154 [exp]	0	1
AT2G02560		TIP120, HVE, ET...	HEMIVENATA, CULLIN-ASSOCIATED ...		Lus10026261 [exp]	4.9	0.9027
AT1G25540		MED25, PFT1	PHYTOCHROME AND FLOWERING TIME...		Lus10041483 [exp]	5.1	0.8970
AT3G13330		PA200	proteasome activating protein ...		Lus10008354 [exp]	12.3	0.8836
AT1G71220		UGGT, PSL2, EBS...	PRIORITY IN SWEET LIFE 2, EMS-...		Lus10015475 [exp]	15.3	0.8695
AT4G32700		TEB	TEBICHI, helicases;ATP-depende...		Lus10022115 [exp]	15.8	0.8943
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Lus10038248 [exp]	18.7	0.8761
AT4G01860			Transducin family protein / WD...		Lus10009986 [exp]	20.4	0.8662
AT3G13330		PA200	proteasome activating protein ...		Lus10027111 [exp]	23.8	0.8820
AT1G71220		UGGT, PSL2, EBS...	PRIORITY IN SWEET LIFE 2, EMS-...		Lus10019946 [exp]	31.0	0.8736
AT2G41520		TPR15	tetratricopeptide repeat 15, H...		Lus10035427 [exp]	36.4	0.8568

Compare expression of checked genes

Lus10016154 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.