Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28190 276 / 7e-95 CZSOD2, CSD2 copper/zinc superoxide dismutase 2 (.1) AT1G08830 192 / 1e-62 CSD1 copper/zinc superoxide dismutase 1 (.1.2) AT5G18100 179 / 3e-57 CSD3 copper/zinc superoxide dismutase 3 (.1.2) AT1G12520 60 / 5e-11 ATCCS, CCS1 copper chaperone for SOD1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021410 [exp] 299 / 9e-104 AT2G28190 306 / 5e-107 copper/zinc superoxide dismutase 2 (.1) Lus10004139 [exp] 189 / 3e-61 AT1G08830 253 / 4e-88 copper/zinc superoxide dismutase 1 (.1.2) Lus10001719 [exp] 187 / 4e-59 AT1G08830 250 / 6e-85 copper/zinc superoxide dismutase 1 (.1.2) Lus10010651 [exp] 177 / 4e-54 AT5G18100 228 / 9e-75 copper/zinc superoxide dismutase 3 (.1.2) Lus10013615 [exp] 161 / 1e-48 AT5G18100 209 / 7e-68 copper/zinc superoxide dismutase 3 (.1.2) Lus10007031 [exp] 58 / 1e-09 AT1G12520 399 / 5e-140 copper chaperone for SOD1 (.1.2.3) Lus10006686 [exp] 57 / 2e-09 AT1G12520 393 / 6e-138 copper chaperone for SOD1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G216700 [exp] 270 / 1e-92 AT2G28190 267 / 2e-91 copper/zinc superoxide dismutase 2 (.1) Potri.009G005100 [exp] 260 / 1e-88 AT2G28190 252 / 2e-85 copper/zinc superoxide dismutase 2 (.1) Potri.013G031100 [exp] 193 / 3e-63 AT1G08830 261 / 6e-91 copper/zinc superoxide dismutase 1 (.1.2) Potri.005G044400 [exp] 192 / 1e-62 AT1G08830 266 / 5e-93 copper/zinc superoxide dismutase 1 (.1.2) Potri.013G056900 [exp] 181 / 2e-58 AT5G18100 239 / 4e-82 copper/zinc superoxide dismutase 3 (.1.2) Potri.019G035800 [exp] 177 / 7e-57 AT5G18100 237 / 3e-81 copper/zinc superoxide dismutase 3 (.1.2) Potri.009G163200 [exp] 61 / 2e-11 AT2G28190 46 / 2e-06 copper/zinc superoxide dismutase 2 (.1) Potri.001G113800 [exp] 55 / 6e-09 AT1G12520 377 / 2e-131 copper chaperone for SOD1 (.1.2.3) Potri.003G118400 [exp] 54 / 1e-08 AT1G12520 393 / 8e-138 copper chaperone for SOD1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00080 [flax] [poplar] Sod_Cu Copper/zinc superoxide dismutase (SODC)
Representative CDS sequence Show only first row Show all	>Lus10016155 pacid=23171846 polypeptide=Lus10016155 locus=Lus10016155.g ID=Lus10016155.BGIv1.0 annot-version=v1.0 ATGCAAGCAGCTGCAGCTGCAGCCATGGCAGCACACACAATCCTATCAACAGCCCCATCATCATTCCACCCCTTCCTTTCTCCCCTCTCAACTCCATCAT CTCTCCACTCCACCGTCTCCCTCAGCTTCCCTCTCCGCCAGCCGACCTCGTCTCTCTCCCTCTCTGCAGCTAAGAAGAAGCCTCTCACGGTCACTGAAGC CGCCAAGAAGGCTGTCGCCGTTATGAAGGGCACCTCTGACGTTGAAGGCGTCGTCACTCTGACTCAGGAAGACGATGGTCCTACGACTGTAAATGTTCGT ATCACTGGTCTCACTCCAGGGCCTCATGGGTTCCACTTGCACGAGTACGGTGACACAACGAATGGCTGCATTTCGACAGGACCTCATTTCAATCCTAACA ACTTGACACATGGGGCTCCTGAAGACGAAGTCCGACATGCGGGTGACCTGGGAAACATAATTGCCAACGCTGATGGAGTAGCAGAGGCAACAATCGTGGA CAAACAGATACCTCTGACTGGTCCGAATGCCGTAGTTGGAAGGGCTTTCGTAGTCCACGAGCTCGCGGATGATCTTGGAAAAGGTGGGCATGAGCTTAGT CTGAGCACAGGCAATGCAGGAGGTAGATTGGCATGCGGTGTCGTTGGGTTGACGCCGGTGTAA
AA sequence Show only first row Show all	>Lus10016155 pacid=23171846 polypeptide=Lus10016155 locus=Lus10016155.g ID=Lus10016155.BGIv1.0 annot-version=v1.0 MQAAAAAAMAAHTILSTAPSSFHPFLSPLSTPSSLHSTVSLSFPLRQPTSSLSLSAAKKKPLTVTEAAKKAVAVMKGTSDVEGVVTLTQEDDGPTTVNVR ITGLTPGPHGFHLHEYGDTTNGCISTGPHFNPNNLTHGAPEDEVRHAGDLGNIIANADGVAEATIVDKQIPLTGPNAVVGRAFVVHELADDLGKGGHELS LSTGNAGGRLACGVVGLTPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28190		CZSOD2, CSD2	copper/zinc superoxide dismuta...		Lus10016155 [exp]	0	1
AT4G02510		TOC86, TOC160, ...	TRANSLOCON AT THE OUTER ENVELO...		Lus10028707 [exp]	2.4	0.8586
AT5G49120			Protein of unknown function (D...		Lus10037493 [exp]	3.2	0.8548
AT5G40510			Sucrase/ferredoxin-like family...		Lus10022274 [exp]	4.9	0.8421
AT4G28730		GrxC5	glutaredoxin C5, Glutaredoxin ...		Lus10022844 [exp]	6.3	0.8782
AT5G19290			alpha/beta-Hydrolases superfam...		Lus10041399 [exp]	6.9	0.8206
AT1G80480		PTAC17	plastid transcriptionally acti...		Lus10018172 [exp]	8.1	0.8482
AT4G24830			arginosuccinate synthase famil...		Lus10030725 [exp]	18.9	0.8230
AT4G27070		TSB2	tryptophan synthase beta-subun...		Lus10011154 [exp]	20.0	0.8588
AT2G33040		ATP3	gamma subunit of Mt ATP syntha...		Lus10007534 [exp]	22.3	0.8449
AT4G19950			unknown protein		Lus10018322 [exp]	24.0	0.8214

Compare expression of checked genes

Lus10016155 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.