Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27980 338 / 4e-100 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G36720 333 / 8e-99 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G37520 315 / 1e-93 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT3G53680 303 / 8e-89 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT1G05380 101 / 2e-21 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1.2) AT5G58610 99 / 7e-21 PHD finger transcription factor, putative (.1) AT5G63900 94 / 1e-19 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT4G14920 94 / 4e-19 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT3G14980 90 / 5e-18 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT5G36740 77 / 5e-14 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027738 [exp] 363 / 4e-110 AT2G36720 821 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10035553 [exp] 360 / 5e-107 AT2G36720 809 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10024419 [exp] 275 / 2e-78 AT2G37520 842 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10025315 [exp] 273 / 5e-78 AT2G37520 845 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10042283 [exp] 118 / 2e-26 AT3G08590 993 / 0.0 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1.2) Lus10015266 [exp] 116 / 5e-26 AT5G58610 558 / 7e-176 PHD finger transcription factor, putative (.1) Lus10012522 [exp] 108 / 7e-24 AT5G58610 285 / 4e-84 PHD finger transcription factor, putative (.1) Lus10006110 [exp] 105 / 2e-22 AT4G14920 868 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10025387 [exp] 104 / 2e-22 AT5G58610 428 / 5e-132 PHD finger transcription factor, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G003900 [exp] 443 / 4e-140 AT2G27980 779 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.004G217600 [exp] 426 / 3e-133 AT2G27980 740 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.016G097300 [exp] 379 / 1e-115 AT2G36720 830 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.006G120200 [exp] 370 / 2e-112 AT2G36720 848 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.006G083600 [exp] 303 / 1e-88 AT2G37520 932 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.009G072600 [exp] 122 / 4e-28 AT5G58610 453 / 1e-139 PHD finger transcription factor, putative (.1) Potri.002G118600 [exp] 116 / 3e-26 AT5G58610 436 / 5e-137 PHD finger transcription factor, putative (.1) Potri.010G087700 [exp] 100 / 3e-21 AT4G14920 805 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.009G016832 [exp] 93 / 3e-21 AT2G37520 149 / 1e-41 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.008G152600 [exp] 94 / 2e-19 AT4G14920 769 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016160 pacid=23171795 polypeptide=Lus10016160 locus=Lus10016160.g ID=Lus10016160.BGIv1.0 annot-version=v1.0 ATGGCGAACGGAACGGATTCGAAGAAGGTCAGGCCAGGGCTGAAGCGGGAGTTCGAGTTCGCGTTCAAGTCCCAATCCGAGATCGACGGGTCATTGGGGC GGACCAGAGCCAGGAAGCCTCAGAACGATGATAATGTGGCGTTGAAGAGGTACAAGAGGCTGACGCGAGGTGCGGTGAAAGAGGAGGAGGAGGAGGCGAA GAGTGATGTGGTGGAACTGAGTAGCGAGGATGAGGAGATTGTACCGTTGCAGCAGCAGTCGAGGAGTTGCGATGTGACGCATGCAGTGGATGCTGAGGAG ATTGAAGAGCGGAACTATGAGGTAAGTGTAAAGGATTTGATGAGTGGCGAAGGTTGTGAGGTGAACGTAGTTGAAACCGTGAGTGATTCTTCTAGGGATG GGATAAGTACGTCGCTGCCGGATTTGATGGATGAGGATTTGAGAAAATTTGTTTCTGATGTAGATAGTGTTTGTGAGGAAGGAGCTAGTGGATTGGATAA GGGTAAGGGGGGTGTTAACGAGTTGAACCATAGGAATCATAGTAAGGTAGAGGAGAAGGTACATAGGAGGTTTACTAGATCAGCTATAAAGGAAAAAACC GAGGCCGTGGTGAATTCAGGGTTAAAAGTTGGTGGTGATGAAGCCGAAGTTAATGAACCGATTTTGAAAGGTCCGGTTTGTGGCCTTTCTGCTACTGTGG GGAATGGTATAGAAAGCAGAACAGAGAAGTTTGGGCAGAATGAGGGTTTGGAATTTGAGAAAAGGCATCAGTCTAAGAGTGGTGATGGAGGCAATGTCTC GGAGGATGGAACCAAAGTTATTGTTAGGAGTGAAGTTGATTTGGGTGATAGCAATCGCTGTATGGAAAAACAGATGCCTGCAAGGAGGTTTACAAGATCA GCACTTAAGGTAATACCTGAGACGGTGGTAAACCCTCAAATGAAAGACAGAGCGAGTGCTGATAAACCTATTCTACATAGTGCCGAACTTAAAGTTGAAA ATGTGCCTGGCTCTATTCCGATTGAAGAGGGAGAGAGTGATGCTAAACCTATTTTGCACTGTGCTGAGGTTGAAGTTGATAATGCACCTGGCTCTCCTAC TATTCAGACTACAGCTGTAGCTTCTAGTAATCATGGCCCAGTTAAACCCTCGAGGAAAACATCATTTAAGTCGAAGTTTCCCTCCAATATGAAGGAGCTT CTTGCTTCTGGTGTCTTGGAGGGACAACACGTGAAGTACCTTAGAGGCCATAAGGTAAGAGGTCCTGGAGAGACCGGACTACTTGGAATAATAATGGGAT CAGCAATTTTGTGCTCTTGTGATCGCTGTAAAGGGGAAGAGGCCGTTCCGCCTGCAGTATTTGAAGTGCATGCTGGAAGTACTAATAAAAAGCCACCCGA GTATACTTACCTGAACAATGGCAATACACTCCGTGATGTAATGAATGCTTGCAAAAACACATCACTTAAAGGGTTAGAGGAAACTCTTCGCCTTTCTATT GGTTGTCTGCCATTAAAGAAGGCAAAGTTCTGTCTGAGCTGCAGAGGGCCAATGGAAGATGCTGTTACTCAGAGTTCAATGATATTGTGCTCTTCATGCC TGGAGCTAAGAAATCCTAAAGCTAGCTTGTCTACAGGTGTCTGTATAGATGATAGTCCTGGGTCTCCTGAGCTACTTCTACTTTCGAGGACATCTGAGAC TGCGTCAAAGTCCTTAGCATCACAAAGCAAGAGCCAAGGGAGACTTACCAGGAATCACGGGTCTCCTGAACCCCTTCTGCTTCCAAGGACACTTGAGACT GTGCCAAAGGCAGCATCGCAAAGCAAGAGCCAGGGGAGGCTTACCCGAAAGGACCTAAAACTACACAAGCTAGTTTTCGAGGAAGATGTGTTGCCTGATG GAACTGAGGTTGCATACTATTCTCGTGGACAGAAATATCTGGTGGGGTATAAGAAAGGGTTCGGAATATTTTGTTCTTGCTGCAACAATGAGCAGAAAGA CATGTTTCTGGAGCGTAATGCAAATGCAATAGCAGCCGGAAGGGTTGCAGGTGTGGACCCGATGGAAGAGATAAACAAGAGATGTATTCGTATCGTCAAA ACTATGGATGCTGATGTTGGGGGGTGTGTATTCTGCAGAGGACATGATTTTGACAAGTCATTCGGTCCCCGTACTGTCATACTCTGTGATCAGTGTGAGA AAGAGTTCCATGTAGGCTGCTTAAGGGATAATAACATGCAAGATCTAAAGGAATTACCTGAAGGAAATTGGTTCTGCTGCAAAGAGTGTGACAACATCCA TTCTTCTCTACAGAAGTTGGTTGTTCGTGGGGAGGAGAAGCTCACAGATGAGGTTATAAAGCAGAAGCAAAATAGTATTAAAACTGATGAAAGCTTCGAC GTAAGATGGAGGCTTCTCAGTGAAAGAGTGGATTCATCGGATGACAGTACTATGTTACTGTCTGATGCTGTCACCATCTTCCATGAACGGTTTGATCCTA TAGTTGTAGACGGACCTGGTCGCCAAGGGGACCGTGACCTTATTCCGTCTATGGTGCATGGAAGGAATATCAAAGGTCAAGAACTCGGCGGAATGTATTG TGCTGTGTTACTAGTCAACCATGTCGTCGTGTCTGCTGCGATATTCAGGGTGTTCGGACAAGATCTGGCGGAACTTCCTTTGGTTGCAACCAGAACCCAG TTCCAAGGACAGGGCTATTTCCAAGTCCTGTATGACCGTATTGAGCAACTCCTCAGTTCACTCGATGTGAAGACTTTCGTACTCCCTGCTGCTGAAGAAG CTGAATCTATCTGGATGAAGAAATTCCTTTTCACTAAGATGACACCCGACGAGGTGATCAAATACAGGAAGAGCTACCAGACGATGGTGTTCCAAGGCAC ATCGATGCTGCAGAAGCCGATTCCCAAATTCCCTATCGTCGGCAATTCAAAAAGCGGCTGA
AA sequence Show only first row Show all	>Lus10016160 pacid=23171795 polypeptide=Lus10016160 locus=Lus10016160.g ID=Lus10016160.BGIv1.0 annot-version=v1.0 MANGTDSKKVRPGLKREFEFAFKSQSEIDGSLGRTRARKPQNDDNVALKRYKRLTRGAVKEEEEEAKSDVVELSSEDEEIVPLQQQSRSCDVTHAVDAEE IEERNYEVSVKDLMSGEGCEVNVVETVSDSSRDGISTSLPDLMDEDLRKFVSDVDSVCEEGASGLDKGKGGVNELNHRNHSKVEEKVHRRFTRSAIKEKT EAVVNSGLKVGGDEAEVNEPILKGPVCGLSATVGNGIESRTEKFGQNEGLEFEKRHQSKSGDGGNVSEDGTKVIVRSEVDLGDSNRCMEKQMPARRFTRS ALKVIPETVVNPQMKDRASADKPILHSAELKVENVPGSIPIEEGESDAKPILHCAEVEVDNAPGSPTIQTTAVASSNHGPVKPSRKTSFKSKFPSNMKEL LASGVLEGQHVKYLRGHKVRGPGETGLLGIIMGSAILCSCDRCKGEEAVPPAVFEVHAGSTNKKPPEYTYLNNGNTLRDVMNACKNTSLKGLEETLRLSI GCLPLKKAKFCLSCRGPMEDAVTQSSMILCSSCLELRNPKASLSTGVCIDDSPGSPELLLLSRTSETASKSLASQSKSQGRLTRNHGSPEPLLLPRTLET VPKAASQSKSQGRLTRKDLKLHKLVFEEDVLPDGTEVAYYSRGQKYLVGYKKGFGIFCSCCNNEQKDMFLERNANAIAAGRVAGVDPMEEINKRCIRIVK TMDADVGGCVFCRGHDFDKSFGPRTVILCDQCEKEFHVGCLRDNNMQDLKELPEGNWFCCKECDNIHSSLQKLVVRGEEKLTDEVIKQKQNSIKTDESFD VRWRLLSERVDSSDDSTMLLSDAVTIFHERFDPIVVDGPGRQGDRDLIPSMVHGRNIKGQELGGMYCAVLLVNHVVVSAAIFRVFGQDLAELPLVATRTQ FQGQGYFQVLYDRIEQLLSSLDVKTFVLPAAEEAESIWMKKFLFTKMTPDEVIKYRKSYQTMVFQGTSMLQKPIPKFPIVGNSKSG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37520			Acyl-CoA N-acyltransferase wit...		Lus10016160 [exp]	0	1
AT1G20410			Pseudouridine synthase family ...		Lus10005645 [exp]	3.6	0.7724
AT1G09980			Putative serine esterase fami...		Lus10038351 [exp]	7.9	0.7724
					Lus10023643 [exp]	9.6	0.7670
AT1G22800			S-adenosyl-L-methionine-depend...		Lus10033838 [exp]	16.9	0.7665
AT1G12430		AtKINUa, ARK3, ...	phosphatidic acid kinase, Arab...		Lus10006670 [exp]	17.5	0.7511
AT5G41980			unknown protein		Lus10024452 [exp]	18.7	0.7486
AT1G20410			Pseudouridine synthase family ...		Lus10021236 [exp]	22.6	0.7508
AT1G14020			O-fucosyltransferase family pr...		Lus10036785 [exp]	23.1	0.7403
AT1G43620		UGT80B1, TT15	TRANSPARENT TESTA 15, UDP-Glyc...		Lus10028572 [exp]	23.7	0.7535
AT3G47390		PHS1	PHOTOSENSITIVE 1, cytidine/deo...		Lus10026832 [exp]	23.9	0.7423

Compare expression of checked genes

Lus10016160 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.