Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27950 263 / 4e-79 Ring/U-Box superfamily protein (.1) AT5G04460 201 / 9e-57 RING/U-box superfamily protein (.1.2.3) AT2G34920 53 / 4e-07 EDA18 embryo sac development arrest 18, RING/U-box superfamily protein (.1) AT1G30860 52 / 8e-07 RING/U-box superfamily protein (.1) AT4G20160 45 / 0.0001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021403 [exp] 514 / 1e-176 AT2G27950 470 / 5e-154 Ring/U-Box superfamily protein (.1) Lus10038656 [exp] 232 / 1e-67 AT5G04460 930 / 0.0 RING/U-box superfamily protein (.1.2.3) Lus10037928 [exp] 231 / 3e-67 AT5G04460 912 / 0.0 RING/U-box superfamily protein (.1.2.3) Lus10028827 [exp] 209 / 8e-60 AT5G04460 879 / 0.0 RING/U-box superfamily protein (.1.2.3) Lus10017455 [exp] 208 / 3e-59 AT5G04460 858 / 0.0 RING/U-box superfamily protein (.1.2.3) Lus10038389 [exp] 52 / 8e-07 AT4G20160 155 / 2e-40 unknown protein Lus10036249 [exp] 51 / 2e-06 AT4G20160 182 / 3e-48 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G003500 [exp] 339 / 8e-108 AT2G27950 578 / 0.0 Ring/U-Box superfamily protein (.1) Potri.004G217700 [exp] 338 / 9e-108 AT2G27950 533 / 2e-177 Ring/U-Box superfamily protein (.1) Potri.008G030100 [exp] 232 / 1e-67 AT5G04460 805 / 0.0 RING/U-box superfamily protein (.1.2.3) Potri.010G231100 [exp] 231 / 3e-67 AT5G04460 768 / 0.0 RING/U-box superfamily protein (.1.2.3) Potri.001G074800 [exp] 56 / 4e-08 AT1G30860 179 / 1e-46 RING/U-box superfamily protein (.1) Potri.003G156400 [exp] 53 / 4e-07 AT2G34920 172 / 5e-45 embryo sac development arrest 18, RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016162 pacid=23171800 polypeptide=Lus10016162 locus=Lus10016162.g ID=Lus10016162.BGIv1.0 annot-version=v1.0 ATGGCTATAGCTGGTCTGCAGAATGTTTCTGTGCTTGATTCGTCATTTCTAAGGGATTCGCAGTCTGATGCGGTGAGAAATCGTGGCGATGATGGAAGGG TGAATGCTCGTGCATCGTCGCTTCTGAGAATGTGGCGGGAGCTTGAAGATGAGCATGGGGTGAGTCATGGCCAGGGAAGGGTTAGTGAGAGGTTGCACCG TGGTGAGGTCTTGAGCAACAACAGTGGTGGTTCGGAGGATGTGAGTGGAGGTGAGAGTGAGTACGGGCAGTGGTCACCGCGCCCTACTGAATCCGAGAAT GGACAGGAGGATGCTGCATCGTCCGATCTTGGGGAGATGGAGAGGGAGAGAGTGAGGCAGATTTTTCGGGAGTGGATGAGTAGTGGCGCTAGGGAAAGGA CGCCGCGAAGAAATGGTTCTAGAGCAGAATGGCTTGGCGAAACCGAGCAGGAGAGAGTGAGGATCATAAGGGAGTGGGTGCAGAGGAATACCCGGCAAAG AGGAGGTGCTCGCTTCGAACGTGGTGATAATGACCATGGTCCTGCTGCTGGCCAGATTGAGCAAGTTCTCGATAGTCTCAACCTTCGTCGTAACGAAGGC CAGGCGGAGCATGCAAGAAGAGGGATCCGTCGAGTCTGTGGCAGACAGGCTCTTCTTGACATGCTTAAGAAGGCTGAGCGAGAACGCCAAAGAGAGCTCC AAGGGTTGCTGGAGCATCGGGCTGTTACTGGATTTGCTCATCGTCACAGGATTCAGTCATTGCTGAGAGGCAGATTCCTGCGAAATAACAGAATGATTGA AACCGAGAGGCCTAGATCAACAGCCGCTCGTGAGCTAGGTTTGCTGAGGCAGAGAAATGCTGTAGCTGATCTGAGGCGAAGCGTCTCTACTCTACTTCGA AGTGGCTTCCGCGAGAGCCTTGATCAGTTGATTCGTTCTTACGTGGAGAGGCAAACTCATGCTAATCTCGAATGGGACGAAACTTCTCCCAGCATAGCAG ACCAAGAGTTGGATCATCAGGATGGGGGTAGAGGACATGCTATTCCAAGCCCTCCACCTGCCCCGCCTTTGCCCCCAGCACTCCCTGCCCAAAGACTATG GGACCGGGAGTCTCAACGTTACCAATGGCCACATCATCATGACATGAATCCTCGCTTCGGGATTGAGTGGGATATTATTAACGACATGCGGATCGACATG GCTAGGATGCAACAGAGGATGAATAACATGCAGCGGATGTTGGAAGCGTGTATGGACATGCAGCTTGAGTTACAGCGCTCGATTCGGCAGGAAGTCTCTG CCGCTCTGAACCGCTCACCGACTTCTCCAGGTGCATACGGAAGTCCGAACCAAACCCTCCCTAGTCCTATTATTCGAAGCCACACTTATAAAAGACCGAC ACGTACAACATAA
AA sequence Show only first row Show all	>Lus10016162 pacid=23171800 polypeptide=Lus10016162 locus=Lus10016162.g ID=Lus10016162.BGIv1.0 annot-version=v1.0 MAIAGLQNVSVLDSSFLRDSQSDAVRNRGDDGRVNARASSLLRMWRELEDEHGVSHGQGRVSERLHRGEVLSNNSGGSEDVSGGESEYGQWSPRPTESEN GQEDAASSDLGEMERERVRQIFREWMSSGARERTPRRNGSRAEWLGETEQERVRIIREWVQRNTRQRGGARFERGDNDHGPAAGQIEQVLDSLNLRRNEG QAEHARRGIRRVCGRQALLDMLKKAERERQRELQGLLEHRAVTGFAHRHRIQSLLRGRFLRNNRMIETERPRSTAARELGLLRQRNAVADLRRSVSTLLR SGFRESLDQLIRSYVERQTHANLEWDETSPSIADQELDHQDGGRGHAIPSPPPAPPLPPALPAQRLWDRESQRYQWPHHHDMNPRFGIEWDIINDMRIDM ARMQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSPTSPGAYGSPNQTLPSPIIRSHTYKRPTRTT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27950			Ring/U-Box superfamily protein...		Lus10016162 [exp]	0	1
AT3G58970		MRS2-4, MGT6	magnesium transporter 6 (.1)		Lus10001373 [exp]	1.4	0.8222
AT4G37680		HHP4	heptahelical protein 4 (.1.2)		Lus10025206 [exp]	2.0	0.8248
AT1G04990	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10035330 [exp]	6.6	0.8064
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10027657 [exp]	6.7	0.7872
AT3G10870		ATMES17, MES17	ARABIDOPSIS THALIANA METHYL ES...		Lus10034252 [exp]	6.9	0.7913
AT5G03330			Cysteine proteinases superfami...		Lus10023019 [exp]	8.1	0.7842
AT1G49780		PUB26	plant U-box 26 (.1)		Lus10014073 [exp]	8.7	0.8039
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10021648 [exp]	9.2	0.8030
AT2G44710			RNA-binding (RRM/RBD/RNP motif...		Lus10012785 [exp]	10.5	0.7381
AT3G48240			Octicosapeptide/Phox/Bem1p fam...		Lus10019490 [exp]	11.5	0.7935

Compare expression of checked genes

Lus10016162 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.