Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27940 134 / 9e-39 RING/U-box superfamily protein (.1) AT4G40070 112 / 8e-30 RING/U-box superfamily protein (.1) AT5G27420 108 / 7e-28 CNI1, ATL31 carbon/nitrogen insensitive 1 (.1) AT3G05200 108 / 1e-27 ATL6 RING/U-box superfamily protein (.1) AT1G72200 105 / 2e-26 RING/U-box superfamily protein (.1) AT3G10910 89 / 5e-22 RING/U-box superfamily protein (.1) AT2G35000 92 / 8e-22 ATL9 Arabidopsis toxicos en levadura 9, RING/U-box superfamily protein (.1) AT1G76410 88 / 1e-21 ATL8 RING/U-box superfamily protein (.1) AT2G17450 88 / 2e-21 RHA3A RING-H2 finger A3A (.1) AT1G23980 89 / 1e-20 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004460 [exp] 108 / 8e-28 AT3G05200 307 / 6e-102 RING/U-box superfamily protein (.1) Lus10000333 [exp] 104 / 3e-26 AT3G05200 309 / 2e-102 RING/U-box superfamily protein (.1) Lus10041134 [exp] 101 / 5e-25 AT1G72200 182 / 3e-54 RING/U-box superfamily protein (.1) Lus10036466 [exp] 97 / 1e-23 AT1G72200 186 / 6e-55 RING/U-box superfamily protein (.1) Lus10029794 [exp] 92 / 2e-21 AT1G72200 219 / 1e-66 RING/U-box superfamily protein (.1) Lus10013210 [exp] 88 / 3e-21 AT1G20823 207 / 3e-68 RING/U-box superfamily protein (.1) Lus10002194 [exp] 87 / 1e-20 AT2G42360 153 / 4e-46 RING/U-box superfamily protein (.1) Lus10030728 [exp] 86 / 2e-20 AT1G20823 209 / 6e-69 RING/U-box superfamily protein (.1) Lus10022743 [exp] 84 / 3e-20 AT3G10910 154 / 5e-48 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G025800 [exp] 112 / 2e-29 AT3G05200 261 / 9e-84 RING/U-box superfamily protein (.1) Potri.005G036800 [exp] 107 / 3e-27 AT3G05200 261 / 7e-84 RING/U-box superfamily protein (.1) Potri.005G160900 [exp] 103 / 6e-26 AT1G22500 203 / 5e-61 Arabidopsis thaliana Arabidopsis toxicos en levadura 15, RING/U-box superfamily protein (.1) Potri.001G212101 [exp] 97 / 3e-24 AT2G27940 96 / 2e-23 RING/U-box superfamily protein (.1) Potri.001G235100 [exp] 94 / 1e-23 AT1G04360 98 / 3e-24 RING/U-box superfamily protein (.1) Potri.002G039700 [exp] 88 / 2e-20 AT5G43420 246 / 4e-79 RING/U-box superfamily protein (.1) Potri.008G165900 [exp] 87 / 3e-20 AT1G04360 312 / 2e-104 RING/U-box superfamily protein (.1) Potri.019G130100 [exp] 84 / 3e-20 AT5G05280 129 / 5e-38 RING/U-box superfamily protein (.1) Potri.008G219200 [exp] 86 / 4e-20 AT3G16720 197 / 2e-61 TOXICOS EN LEVADURA 2 (.1) Potri.019G043900 [exp] 85 / 9e-20 AT3G03550 223 / 3e-71 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10016163 pacid=23171824 polypeptide=Lus10016163 locus=Lus10016163.g ID=Lus10016163.BGIv1.0 annot-version=v1.0 ATGCCCCAGGTTGGTATGCTCGGCTCTTTATTTTTCCCAGCCGGCGCCGGCGAGAAGGAGCCAGCTGGTGAAACATCATTTCAACGCCCACCGCCGCCGG ATTATGAATCTGACCGACAACTGCATCCGCCAATCGACTCCTCCATGGCTCTGACGATCTTGGTCCTTTTAACGGCTCTCTTCTTCATGGGGTTCTTCTC CATTTATATCCGCCGGTTTGCCGCCGACGTCGCCGCTAGCGACGTCGAAGCCGGGTACTACCGGCGACGGCGGGGTGTTGGGTTGTCGAGTGGGAAAGGT CTGGACCCGGAGGTGGTGGGTTCGCTACCGGAGTTCCGCTACCGACGGGGAGAGAAGTGTAGTAGTCCGCCGGCGGCGGAGGAGTGTGTAATTTGCTTGG GGGAGTTTGAGGAAGGGGAGAGGGTTAAAGTGCTACCGTTTTGCGGGCACGTGTTCCACGTGGAGTGTGTAGACACGTGGCTGATGAGTCAAGTTAGCTG TCCTTTGTGTAGGACTGTTTGTACGTCGCCCCCCAGCCAGTTAATTTGCTTATCGCCCGCCGCGGCGGTGGTGGATCGGCGGCGGAGGTTGAGGGGAGAT CGACAGTGGAAAGAAGTGCCACGTGGAACGGTGGAGTGA
AA sequence Show only first row Show all	>Lus10016163 pacid=23171824 polypeptide=Lus10016163 locus=Lus10016163.g ID=Lus10016163.BGIv1.0 annot-version=v1.0 MPQVGMLGSLFFPAGAGEKEPAGETSFQRPPPPDYESDRQLHPPIDSSMALTILVLLTALFFMGFFSIYIRRFAADVAASDVEAGYYRRRRGVGLSSGKG LDPEVVGSLPEFRYRRGEKCSSPPAAEECVICLGEFEEGERVKVLPFCGHVFHVECVDTWLMSQVSCPLCRTVCTSPPSQLICLSPAAAVVDRRRRLRGD RQWKEVPRGTVE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27940			RING/U-box superfamily protein...		Lus10016163 [exp]	0	1
AT3G11890			Sterile alpha motif (SAM) doma...		Lus10021086 [exp]	1.4	0.8749
AT3G06590	bHLH	bHLH148, AIF2	basic helix-loop-helix (bHLH) ...		Lus10010907 [exp]	6.3	0.8663
AT5G27320		ATGID1C, GID1C	GA INSENSITIVE DWARF1C, alpha/...		Lus10002254 [exp]	9.8	0.8866
AT4G36040		J11	DnaJ11, Chaperone DnaJ-domain ...		Lus10041906 [exp]	19.9	0.8460
AT2G17880			Chaperone DnaJ-domain superfam...		Lus10028453 [exp]	28.4	0.8546
AT4G39040			RNA-binding CRS1 / YhbY (CRM) ...		Lus10028787 [exp]	31.8	0.8246
AT3G29270			RING/U-box superfamily protein...		Lus10005220 [exp]	32.2	0.8651
AT3G10760	GARP		Homeodomain-like superfamily p...		Lus10010442 [exp]	38.9	0.8155
AT1G13570			F-box/RNI-like superfamily pro...		Lus10030920 [exp]	43.3	0.8521
AT1G27700			Syntaxin/t-SNARE family protei...		Lus10007766 [exp]	45.3	0.8242

Compare expression of checked genes

Lus10016163 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.