Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10460 52 / 3e-09 Plant self-incompatibility protein S1 family (.1) AT4G29035 50 / 2e-08 Plant self-incompatibility protein S1 family (.1) AT3G26880 50 / 2e-08 Plant self-incompatibility protein S1 family (.1) AT4G16295 49 / 4e-08 SPH1 S-protein homologue 1 (.1) AT1G11765 47 / 4e-07 Plant self-incompatibility protein S1 family (.1) AT2G23148 45 / 9e-07 Plant self-incompatibility protein S1 family (.1) AT5G04350 44 / 2e-06 Plant self-incompatibility protein S1 family (.1) AT1G28305 44 / 3e-06 Plant self-incompatibility protein S1 family (.1) AT5G38435 44 / 5e-06 SPH8 S-protein homologue 8 (.1) AT3G27680 43 / 6e-06 Plant self-incompatibility protein S1 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029376 [exp] 142 / 2e-44 AT5G38435 52 / 3e-09 S-protein homologue 8 (.1) Lus10029379 [exp] 142 / 3e-44 AT5G38435 47 / 2e-07 S-protein homologue 8 (.1) Lus10029385 [exp] 141 / 7e-44 AT5G38435 55 / 3e-10 S-protein homologue 8 (.1) Lus10029384 [exp] 139 / 3e-43 AT5G38435 51 / 1e-08 S-protein homologue 8 (.1) Lus10029378 [exp] 133 / 7e-41 AT5G04350 54 / 1e-09 Plant self-incompatibility protein S1 family (.1) Lus10029381 [exp] 133 / 9e-41 AT5G04350 54 / 1e-09 Plant self-incompatibility protein S1 family (.1) Lus10029380 [exp] 130 / 8e-40 AT5G04350 54 / 5e-10 Plant self-incompatibility protein S1 family (.1) Lus10016168 [exp] 129 / 2e-39 AT5G38435 51 / 9e-09 S-protein homologue 8 (.1) Lus10029383 [exp] 126 / 8e-38 AT5G04350 63 / 6e-13 Plant self-incompatibility protein S1 family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G066900 [exp] 74 / 3e-17 AT4G29035 85 / 1e-21 Plant self-incompatibility protein S1 family (.1) Potri.002G252500 [exp] 57 / 4e-11 AT4G16295 116 / 9e-34 S-protein homologue 1 (.1) Potri.004G199801 [exp] 54 / 9e-10 AT4G16295 67 / 2e-14 S-protein homologue 1 (.1) Potri.004G199700 [exp] 47 / 2e-07 AT4G16295 69 / 2e-15 S-protein homologue 1 (.1) Potri.003G175200 [exp] 43 / 8e-06 AT3G24060 177 / 2e-58 Plant self-incompatibility protein S1 family (.1) Potri.001G053300 [exp] 40 / 9e-05 AT3G24060 82 / 2e-20 Plant self-incompatibility protein S1 family (.1) Potri.003G201300 [exp] 39 / 0.0002 AT2G06090 65 / 5e-14 Plant self-incompatibility protein S1 family (.1) Potri.006G170200 [exp] 39 / 0.0002 AT5G12060 48 / 1e-07 Plant self-incompatibility protein S1 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05938 [flax] [poplar] Self-incomp_S1 Plant self-incompatibility protein S1
Representative CDS sequence Show only first row Show all	>Lus10016165 pacid=23142746 polypeptide=Lus10016165 locus=Lus10016165.g ID=Lus10016165.BGIv1.0 annot-version=v1.0 ATGAGATCCGAGATTCTCTCGCTTGCTATCGTGGTAGCAACATTTGTGCTCGCCACAACAATTTTTGCAGCACCGCCTGTTGATTTCAAGAGAACCATAC ATGTCCACATCATAAACGAGCTTCAGCATAACCAACAGTTGGCCGTGCAGTGTAACTGTACTGACACACGTCGGCCAACCGGCTACGTCAAACCTGGAGC TGAGTACGAGTGGTCGTTCAAAGAACATTTTCTACGGAAGACTCAATGGTTATGCTATCTCTCTCCGGACAACAATCGTCACGCCAATATTGAAGCCTTT GTGGACATGACGCCTACTGACAACTACAACGTCTATTGGGCCGTTAAAGAAGACGGCATTTACTTTAGGTTTCCTAATCCTCCTGATTTTCTCACATATA AATGGGAATCCGGTCGCTAA
AA sequence Show only first row Show all	>Lus10016165 pacid=23142746 polypeptide=Lus10016165 locus=Lus10016165.g ID=Lus10016165.BGIv1.0 annot-version=v1.0 MRSEILSLAIVVATFVLATTIFAAPPVDFKRTIHVHIINELQHNQQLAVQCNCTDTRRPTGYVKPGAEYEWSFKEHFLRKTQWLCYLSPDNNRHANIEAF VDMTPTDNYNVYWAVKEDGIYFRFPNPPDFLTYKWESGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10460			Plant self-incompatibility pro...		Lus10016165 [exp]	0	1
AT1G24460		TNO1	TGN-localized SYP41 interactin...		Lus10009250 [exp]	1.0	1.0000
					Lus10020192 [exp]	1.4	0.9190
AT5G03860		MLS	malate synthase (.1.2)		Lus10006282 [exp]	2.0	0.8413
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10015092 [exp]	6.7	0.8797
AT5G59845			Gibberellin-regulated family p...		Lus10018708 [exp]	7.9	0.7142
AT5G28210			mRNA capping enzyme family pro...		Lus10040496 [exp]	11.4	0.7989
AT1G64090		RTNLB3	Reticulan like protein B3 (.1....		Lus10013099 [exp]	12.2	0.6951
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10023904 [exp]	14.3	0.7742
AT4G11530		CRK34	cysteine-rich RLK (RECEPTOR-li...		Lus10022285 [exp]	15.4	0.7742
					Lus10010383 [exp]	16.5	0.7742

Compare expression of checked genes

Lus10016165 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.