Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52450 462 / 1e-161 PUB22 plant U-box 22 (.1) AT2G35930 447 / 4e-156 PUB23 plant U-box 23 (.1) AT3G11840 243 / 1e-75 PUB24 plant U-box 24 (.1) AT3G19380 179 / 2e-51 PUB25 plant U-box 25 (.1) AT1G49780 160 / 1e-44 PUB26 plant U-box 26 (.1) AT5G37490 160 / 2e-44 ARM repeat superfamily protein (.1) AT1G66160 153 / 9e-42 ATCMPG1 "CYS, MET, PRO, and GLY protein 1", CYS, MET, PRO, and GLY protein 1 (.1.2) AT1G23030 134 / 5e-34 PUB11 ARM repeat superfamily protein (.1) AT1G71020 120 / 1e-29 ARM repeat superfamily protein (.1.2) AT5G09800 112 / 3e-27 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029393 [exp] 792 / 0 AT3G52450 462 / 1e-161 plant U-box 22 (.1) Lus10013584 [exp] 592 / 0 AT2G35930 471 / 2e-165 plant U-box 23 (.1) Lus10021267 [exp] 587 / 0 AT2G35930 474 / 5e-167 plant U-box 23 (.1) Lus10004191 [exp] 295 / 6e-94 AT3G11840 300 / 2e-95 plant U-box 24 (.1) Lus10029395 [exp] 279 / 1e-89 AT3G11840 296 / 8e-96 plant U-box 24 (.1) Lus10004095 [exp] 239 / 2e-77 AT2G35930 228 / 3e-73 plant U-box 23 (.1) Lus10000800 [exp] 246 / 3e-77 AT3G11840 293 / 7e-95 plant U-box 24 (.1) Lus10008368 [exp] 243 / 1e-75 AT3G11840 284 / 2e-91 plant U-box 24 (.1) Lus10013352 [exp] 228 / 2e-72 AT2G35930 212 / 6e-67 plant U-box 23 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G069400 [exp] 530 / 0 AT3G52450 511 / 0.0 plant U-box 22 (.1) Potri.006G202600 [exp] 525 / 0 AT3G52450 511 / 0.0 plant U-box 22 (.1) Potri.009G016200 [exp] 478 / 6e-168 AT2G35930 475 / 4e-167 plant U-box 23 (.1) Potri.001G216100 [exp] 453 / 2e-158 AT2G35930 452 / 5e-158 plant U-box 23 (.1) Potri.009G016100 [exp] 320 / 5e-106 AT3G11840 326 / 6e-108 plant U-box 24 (.1) Potri.006G202700 [exp] 314 / 8e-104 AT3G11840 362 / 3e-122 plant U-box 24 (.1) Potri.016G069500 [exp] 306 / 5e-101 AT3G11840 367 / 7e-124 plant U-box 24 (.1) Potri.001G216300 [exp] 295 / 3e-96 AT3G11840 303 / 6e-99 plant U-box 24 (.1) Potri.002G174500 [exp] 261 / 4e-83 AT2G35930 249 / 9e-79 plant U-box 23 (.1) Potri.014G101100 [exp] 249 / 1e-78 AT2G35930 266 / 3e-85 plant U-box 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10016166 pacid=23142655 polypeptide=Lus10016166 locus=Lus10016166.g ID=Lus10016166.BGIv1.0 annot-version=v1.0 ATGGACGCAGAGATCGAGATCCCAACGTACTTCCTCTGCCCCATTTCGCTGCAAATGATGAAGGATCCGGTCACTGTCCCCACCGGCATCACCTACGACC GGGACAGCATCGAGCGGTGGCTCTTCCCGGGGAAGAATACGACCTGTCCGGTCACCAAGCAGGTAATCGTCGCATCCATGGATGAAAACTCCTCCGATCT TATGACGCCCAACATCATCCTCCGTCGGCTCATCCAGTCTTGGTGCACCCTCAACGCTTCCTACGGCGTTGACCGCATCCCGACTCCTAAAGCACCAGTC AGCCGGTCCCAAGTCGCCAAGCTCGTGAGCTCTGGGCCGACGCAGAAGATCAAGTGCCTCAAGAAGTTGAAGTCCTTGGCTAAAGAGAACGACGCCAACC GCCGGTGTATAGAGTCAACTGCCGGAGCAGTTGACTTTTTAGCGTCGGTTGTGGTCGAAGAGTTTGACGACGAGGCAGGCGAAGAGGATGTGGTCGGGGT GAGTTTTGTTGATGACCAGTTCAGCATTAGTGCTTCTGACGAGGCACTGCGCCTTCTGCATGGGCTCCAGATCTCGGAGTCCGGGCTGAAGGCTCTGGTG AACAGGAACCACAAGTTTGTCGACTCGCTGGCGCGTGTAATGCGGAGCGGGAACTACGAGTCCCGGACTTACGCAGTATCGCTGGCGAAATCAATGTTCG GAGTGGCGGATCCGCTGAGGATCATCGGGGTGAGGAGTGAGTTTTTCGGGGAGATCGTTCAGGTGATTAGGGATCAAGTATCCAGACAAGCAACCAAGGC GGCATTGTCTCTCCTCATCGAGCTGTGCCCCTGGGGGCGCAACCGGATCAAGGCGGTCCATGCTGGTGTGGTTCCGGCCATCATCGATCTCCTGCTCGAT TCGAACGACAGGCGGCCCTGCGAGATGGGAATGGCAGTCCTTGACTTGGCGTGCCAGTGTGCAGACGGCAGGGCCGAGTTGGTGAAACACGCGGCTGGGC TTGCGGTGGTTTCGAAGAAGATGCTCCGCATTTCGAGCATGGTGACCGAGAAGGCGGTGAGGGTTTTGCTTTCGGTCGGGAAGTCTTCCGCGAGTAGCAT TGTTCTTCAGGAGATGCTGCAGATTGGAGTGGTGGCGAAGCTGTGTTTGGTGTTGCAAGTGGAGAGTAGCCATAAGGCTAAGGATAAGGCGATGGAGTTG TTGAGGTTGCACGCTAGGGTTTGGAAGAGCTCGCCATGCATACCTCCGAGTTTGCTCTATTCTTACCCGGCTGGATCATGA
AA sequence Show only first row Show all	>Lus10016166 pacid=23142655 polypeptide=Lus10016166 locus=Lus10016166.g ID=Lus10016166.BGIv1.0 annot-version=v1.0 MDAEIEIPTYFLCPISLQMMKDPVTVPTGITYDRDSIERWLFPGKNTTCPVTKQVIVASMDENSSDLMTPNIILRRLIQSWCTLNASYGVDRIPTPKAPV SRSQVAKLVSSGPTQKIKCLKKLKSLAKENDANRRCIESTAGAVDFLASVVVEEFDDEAGEEDVVGVSFVDDQFSISASDEALRLLHGLQISESGLKALV NRNHKFVDSLARVMRSGNYESRTYAVSLAKSMFGVADPLRIIGVRSEFFGEIVQVIRDQVSRQATKAALSLLIELCPWGRNRIKAVHAGVVPAIIDLLLD SNDRRPCEMGMAVLDLACQCADGRAELVKHAAGLAVVSKKMLRISSMVTEKAVRVLLSVGKSSASSIVLQEMLQIGVVAKLCLVLQVESSHKAKDKAMEL LRLHARVWKSSPCIPPSLLYSYPAGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52450		PUB22	plant U-box 22 (.1)		Lus10016166 [exp]	0	1
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10003557 [exp]	15.6	0.8608
AT3G08650			ZIP metal ion transporter fami...		Lus10003243 [exp]	16.5	0.8494
AT5G57500			Galactosyltransferase family p...		Lus10019998 [exp]	22.8	0.8432
AT5G08570			Pyruvate kinase family protein...		Lus10013449 [exp]	25.9	0.8534
AT5G58730			pfkB-like carbohydrate kinase ...		Lus10018235 [exp]	28.4	0.8443
AT5G49190		ATSUS2, SSA, SU...	SUCROSE SYNTHASE FROM ARABIDOP...		Lus10010308 [exp]	38.0	0.8382
AT1G80600		WIN1	HOPW1-1-interacting 1 (.1)		Lus10031196 [exp]	64.5	0.8215
AT1G02360			Chitinase family protein (.1)		Lus10009968 [exp]	70.6	0.7959
AT4G19460			UDP-Glycosyltransferase superf...		Lus10034760 [exp]	75.2	0.8036
AT2G41410			Calcium-binding EF-hand family...		Lus10038970 [exp]	76.5	0.8075

Compare expression of checked genes

Lus10016166 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.