Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04347 53 / 2e-09 Plant self-incompatibility protein S1 family (.1) AT4G29035 53 / 3e-09 Plant self-incompatibility protein S1 family (.1) AT4G16295 51 / 1e-08 SPH1 S-protein homologue 1 (.1) AT3G10460 47 / 3e-07 Plant self-incompatibility protein S1 family (.1) AT5G04350 46 / 9e-07 Plant self-incompatibility protein S1 family (.1) AT4G16195 44 / 6e-06 Plant self-incompatibility protein S1 family (.1) AT5G38435 43 / 1e-05 SPH8 S-protein homologue 8 (.1) AT1G26798 42 / 2e-05 Plant self-incompatibility protein S1 family (.1) AT1G28305 40 / 7e-05 Plant self-incompatibility protein S1 family (.1) AT1G11765 39 / 0.0002 Plant self-incompatibility protein S1 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029383 [exp] 113 / 1e-32 AT5G04350 63 / 6e-13 Plant self-incompatibility protein S1 family (.1) Lus10029375 [exp] 110 / 1e-31 AT5G04347 62 / 4e-13 Plant self-incompatibility protein S1 family (.1) Lus10029390 [exp] 107 / 2e-30 AT4G16295 71 / 5e-16 S-protein homologue 1 (.1) Lus10016165 [exp] 107 / 3e-30 AT3G10460 52 / 2e-09 Plant self-incompatibility protein S1 family (.1) Lus10029388 [exp] 101 / 4e-28 AT5G04350 55 / 3e-10 Plant self-incompatibility protein S1 family (.1) Lus10011895 [exp] 101 / 7e-28 AT4G29035 72 / 3e-16 Plant self-incompatibility protein S1 family (.1) Lus10029386 [exp] 100 / 1e-27 AT4G29035 53 / 2e-09 Plant self-incompatibility protein S1 family (.1) Lus10029379 [exp] 100 / 2e-27 AT5G38435 47 / 2e-07 S-protein homologue 8 (.1) Lus10029385 [exp] 98 / 9e-27 AT5G38435 55 / 3e-10 S-protein homologue 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G066900 [exp] 72 / 2e-16 AT4G29035 85 / 1e-21 Plant self-incompatibility protein S1 family (.1) Potri.002G252500 [exp] 59 / 1e-11 AT4G16295 116 / 9e-34 S-protein homologue 1 (.1) Potri.006G170200 [exp] 48 / 1e-07 AT5G12060 48 / 1e-07 Plant self-incompatibility protein S1 family (.1) Potri.001G053300 [exp] 45 / 2e-06 AT3G24060 82 / 2e-20 Plant self-incompatibility protein S1 family (.1) Potri.004G199700 [exp] 44 / 5e-06 AT4G16295 69 / 2e-15 S-protein homologue 1 (.1) Potri.004G199801 [exp] 42 / 2e-05 AT4G16295 67 / 2e-14 S-protein homologue 1 (.1) Potri.001G053200 [exp] 40 / 8e-05 AT3G24060 56 / 1e-10 Plant self-incompatibility protein S1 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05938 [flax] [poplar] Self-incomp_S1 Plant self-incompatibility protein S1
Representative CDS sequence Show only first row Show all	>Lus10016171 pacid=23142649 polypeptide=Lus10016171 locus=Lus10016171.g ID=Lus10016171.BGIv1.0 annot-version=v1.0 ATGATGATCACACTACCGTCCCTCACTATCATGGCGGCGGCAGCGGTGGTAACGGTAATTCTGGCGACAATTCCACCATCGTCAGCAGGGTTGTTATCGT ACTATCATGTCCACATCATCAACGACCTAGACAACGCCGAGTCCTTGTTGGTGCGTTGTCACTGTACCGACCACGAACTGGGAGACCACTACATCGCCCC CGGTCGCGAATTCGAGTGGAGGTTCAAGGAGCACATATTTAGAAAGACGCTATGGCAGTGCTACGTCTCTCCGACGGACGAAAAACTCCACGTGGATTTC CACGCCTTCGATGACTTCACGGTCACCTTCGGTAACCACGTGTACTGGATAGTGAAGGAGATCGGCGTCTTCTATCGAGACGCCGATAGTATGAAAGATG TGTTCATGTACGGATGGCAACATGGCCGGCTTCCTGTGTCATGA
AA sequence Show only first row Show all	>Lus10016171 pacid=23142649 polypeptide=Lus10016171 locus=Lus10016171.g ID=Lus10016171.BGIv1.0 annot-version=v1.0 MMITLPSLTIMAAAAVVTVILATIPPSSAGLLSYYHVHIINDLDNAESLLVRCHCTDHELGDHYIAPGREFEWRFKEHIFRKTLWQCYVSPTDEKLHVDF HAFDDFTVTFGNHVYWIVKEIGVFYRDADSMKDVFMYGWQHGRLPVS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04347			Plant self-incompatibility pro...		Lus10016171 [exp]	0	1
					Lus10030050 [exp]	3.6	0.8242
AT5G26594		ARR24	response regulator 24 (.1)		Lus10004775 [exp]	4.8	0.8672
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10019853 [exp]	6.8	0.8672
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10026765 [exp]	8.3	0.8672
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10036457 [exp]	9.6	0.8672
AT4G15610			Uncharacterised protein family...		Lus10033972 [exp]	10.7	0.8583
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10039329 [exp]	10.7	0.8672
AT5G38760			Late embryogenesis abundant pr...		Lus10012179 [exp]	12.0	0.8399
AT3G57530		ATCPK32, CDPK32...	calcium-dependent protein kina...		Lus10042370 [exp]	12.4	0.8551
AT4G13250		NYC1, NYC	NON-YELLOW COLORING 1, NAD(P)-...		Lus10034917 [exp]	13.6	0.8550

Compare expression of checked genes

Lus10016171 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.