Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12350 398 / 6e-140 ATCOAB 4-phospho-panto-thenoylcysteine synthetase (.1) AT5G02080 357 / 3e-124 DNA / pantothenate metabolism flavoprotein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029374 [exp] 619 / 0 AT1G12350 399 / 2e-140 4-phospho-panto-thenoylcysteine synthetase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G090500 [exp] 459 / 1e-163 AT1G12350 413 / 8e-146 4-phospho-panto-thenoylcysteine synthetase (.1) Potri.005G170600 [exp] 447 / 3e-159 AT1G12350 363 / 3e-126 4-phospho-panto-thenoylcysteine synthetase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF04127 [flax] [poplar] DFP DNA / pantothenate metabolism flavoprotein
Representative CDS sequence Show only first row Show all	>Lus10016172 pacid=23142718 polypeptide=Lus10016172 locus=Lus10016172.g ID=Lus10016172.BGIv1.0 annot-version=v1.0 ATGGAGTCGGCTGCAAATGGATCAGGACATGAACTCTCGCCAGAAGAAGCAGCGGTTTCCTTCTTCAGCTCAGCTCCTCCACTCAAGGAGAAGGACAATG TGACGAACAGAGTAACTGAGTTCATTGAGCTCAATTCTTCTGCAACAGGAGATGGAGGTCATAGACGACCTAGGAAGGTTGTGTGCGTCACGTCAGGTGG CACCACAGTTCCATTGGAGCAGCGTTGCGTTCGTTACATTGATAATTTCAGTTCAGGCCATAGAGGAGCGACATCAGCTGAGTGCTTCATTAAGGCTGGC TATGCTGTGGTTTTTATGTACAGGAGGGCAACCATCCTGCCATATACTCGCTCTCTTCCTGATGATCCGCTGCTGGAATGTTTCGAGGTTGGTGAAGATG TCACTGTTCAAGTACGACAGTCATGTTCGGAAGCAGTGAAGTCGGCGGTTAGCAATCATCATGCTGCTGTAGCAGACCACCTACTCTTAAAACTTCCTTT CACAACCATCTTTGAGTATCTTCAGATGTTACAAATTATCGCGAAAGCAATGAAGCCTCTCGGGCCACATTCCATGTTTTATCTTGCTGCTGCTGTGTCA GACTTCTACGTTCCATGGGAGAGCATGGCAGAGCACAAGATTCAGTCAGCATCAGGCCCTCTGGATATGCGACTGGTTCAAGTGCCGAAAATGCTCTCCA TCCTGAAGAAAGATTGGGCTCCATTGGCCTTCTGCATATCATTCAAGTTGGAGACTGATTCGAAGATCCTGCTAGAGAAGGCAGAGATGGCACTTCGAAA GTACAAGATGCACATGGTGATTGCGAACGAGCTGCTGACTCGTAAAGAGGTGGTTACAGTGGTTACAATGGACGGGAATATTCCGGTTCACCGGCGGCCT GATTCTGATGTGGAACAACCCCTCATTGAACTCATCATGGACCAGCATTCAACTCACATCAAGAACAACTAA
AA sequence Show only first row Show all	>Lus10016172 pacid=23142718 polypeptide=Lus10016172 locus=Lus10016172.g ID=Lus10016172.BGIv1.0 annot-version=v1.0 MESAANGSGHELSPEEAAVSFFSSAPPLKEKDNVTNRVTEFIELNSSATGDGGHRRPRKVVCVTSGGTTVPLEQRCVRYIDNFSSGHRGATSAECFIKAG YAVVFMYRRATILPYTRSLPDDPLLECFEVGEDVTVQVRQSCSEAVKSAVSNHHAAVADHLLLKLPFTTIFEYLQMLQIIAKAMKPLGPHSMFYLAAAVS DFYVPWESMAEHKIQSASGPLDMRLVQVPKMLSILKKDWAPLAFCISFKLETDSKILLEKAEMALRKYKMHMVIANELLTRKEVVTVVTMDGNIPVHRRP DSDVEQPLIELIMDQHSTHIKNN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12350		ATCOAB	4-phospho-panto-thenoylcystein...		Lus10016172 [exp]	0	1
AT2G17030			F-box family protein with a do...		Lus10012519 [exp]	2.2	0.7910
AT3G07670			Rubisco methyltransferase fami...		Lus10012309 [exp]	8.2	0.7747
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10026275 [exp]	14.3	0.7136
AT2G41720		EMB2654	EMBRYO DEFECTIVE 2654, Tetratr...		Lus10042068 [exp]	15.6	0.7249
AT5G58870		FTSH9	FTSH protease 9 (.1)		Lus10040695 [exp]	18.3	0.7692
AT4G33630		EX1	EXECUTER1, Protein of unknown ...		Lus10007064 [exp]	20.1	0.7528
AT1G68050		ADO3, FKF1	"flavin-binding, kelch repeat,...		Lus10029002 [exp]	25.5	0.6725
AT2G41720		EMB2654	EMBRYO DEFECTIVE 2654, Tetratr...		Lus10018075 [exp]	25.8	0.7454
AT1G53530			Peptidase S24/S26A/S26B/S26C f...		Lus10015272 [exp]	26.6	0.7200
AT3G20730			Tetratricopeptide repeat (TPR)...		Lus10027534 [exp]	27.5	0.7343

Compare expression of checked genes

Lus10016172 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.