Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11820 432 / 7e-153 PEN1, AT-SYR1, ATSYR1, ATSYP121, SYP121 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) AT1G61290 367 / 9e-128 ATSYP124, SYP124 syntaxin of plants 124 (.1) AT1G11250 362 / 1e-125 ATSYP125, SYP125 syntaxin of plants 125 (.1) AT3G52400 359 / 5e-124 ATSYP122, SYP122 syntaxin of plants 122 (.1) AT4G03330 342 / 7e-118 ATSYP123, SYP123 syntaxin of plants 123 (.1) AT3G03800 256 / 7e-84 ATSYP131, SYP131 syntaxin of plants 131 (.1) AT5G08080 244 / 4e-79 ATSYP132, SYP132 syntaxin of plants 132 (.1.2.3) AT1G08560 239 / 2e-77 KN, ATSYP111, SYP111 KNOLLE, syntaxin of plants 111 (.1) AT2G18260 197 / 6e-61 ATSYP112, SYP112 syntaxin of plants 112 (.1) AT5G16830 50 / 1e-06 ATSYP21, ATPEP12, SYP21, PEP12P syntaxin of plants 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029373 [exp] 531 / 0 AT3G11820 441 / 4e-157 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Lus10021263 [exp] 488 / 8e-175 AT3G11820 436 / 3e-154 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Lus10013589 [exp] 469 / 7e-168 AT3G11820 437 / 2e-155 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Lus10018441 [exp] 363 / 5e-126 AT1G61290 491 / 4e-177 syntaxin of plants 124 (.1) Lus10006735 [exp] 363 / 9e-126 AT1G61290 491 / 3e-177 syntaxin of plants 124 (.1) Lus10011244 [exp] 362 / 2e-125 AT1G61290 487 / 2e-175 syntaxin of plants 124 (.1) Lus10020089 [exp] 356 / 4e-122 AT1G61290 467 / 2e-166 syntaxin of plants 124 (.1) Lus10042527 [exp] 263 / 1e-86 AT1G08560 391 / 2e-137 KNOLLE, syntaxin of plants 111 (.1) Lus10021988 [exp] 262 / 4e-86 AT1G08560 388 / 2e-136 KNOLLE, syntaxin of plants 111 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G202200 [exp] 457 / 2e-163 AT3G11820 412 / 3e-145 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Potri.016G068600 [exp] 454 / 5e-162 AT3G11820 421 / 5e-149 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Potri.011G043700 [exp] 371 / 3e-129 AT1G61290 456 / 3e-163 syntaxin of plants 124 (.1) Potri.004G035400 [exp] 364 / 1e-126 AT1G61290 490 / 8e-177 syntaxin of plants 124 (.1) Potri.013G053200 [exp] 271 / 1e-89 AT1G08560 430 / 8e-153 KNOLLE, syntaxin of plants 111 (.1) Potri.019G030800 [exp] 263 / 1e-86 AT1G08560 431 / 3e-153 KNOLLE, syntaxin of plants 111 (.1) Potri.019G036700 [exp] 253 / 1e-82 AT3G03800 391 / 1e-137 syntaxin of plants 131 (.1) Potri.007G123000 [exp] 222 / 7e-70 AT3G03800 300 / 1e-100 syntaxin of plants 131 (.1) Potri.007G023100 [exp] 214 / 1e-67 AT2G18260 352 / 3e-122 syntaxin of plants 112 (.1) Potri.005G121300 [exp] 195 / 3e-60 AT2G18260 356 / 6e-124 syntaxin of plants 112 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0445 [flax] [poplar] SNARE-fusion PF00804 [flax] [poplar] Syntaxin Syntaxin CL0445 [flax] [poplar] PF05739 [flax] [poplar] SNARE SNARE domain
Representative CDS sequence Show only first row Show all	>Lus10016173 pacid=23142739 polypeptide=Lus10016173 locus=Lus10016173.g ID=Lus10016173.BGIv1.0 annot-version=v1.0 ATGAATGATCTCTTCTCCGGCTCATTCTCCCGCTTCCGCAACGAAGACCCGCCGTCCCCCGACCACCATGACCACCACCAAACCGTCCAGATGTCGTCCC AGATCCCCCCTTCCACCACCGGCGTCAACCTCGACAAGTTCTTCCAGGACGTCGAAACTATCAAAGAAGAGCTCAAGGACCTGGAGAAGCTCAATTCTAG CCTCCAGTCTTCTCACGAGCACAGCAAGACTTTACACCACGCCAAAGCTGTCAAGGACCTCCGAGCTCAAATGGACTCCGACGTCTCCACCGCTCTCAAG AAGGCTAAGCTGATTAAAGTTCGGTTGGAGGCTCTAGATCGGTCCAACGCTTCTCATCGTAGCGTCCCCGGTTGCGGACCCGGGTCGTCGTCTGACCGGA CCCGGACTTCCGTGGTCAACGGGCTGAGGAAGAAGCTCAAGGATTCCATGGAAGGGTTTAATGCCTTGAGAGGGAAGATCTCCTCAGAGTATCGAGAGAC TGTTGAGAGGAGGTACTTTACTGTCACTGGAGAGAATCCTGATGATAAGATTCTCGATCGTCTGATCTCTACAGGGGAGAGCGAGACATTTCTTCAGAAG GCGATTCAGGAGCAAGGAAGGGGACGAGTGCTGGACACGATCAACGAGATTCAGGAAAGGCATGACGCGGTGAAGGACATGGAGAAGAACCTAAAGGAGC TGCATCAGGTGTTCTTGGACATGGCGGTACTGGTGGAAGCACAGGGGGAGCAGTTGGACGATATTGAGAGCAATATGCAGAGAGCAAGCTCGTTTGTCCG GGGTGGTACTCAGCAGTTGCAGACTGCGAGAGTTCTGCAAAAGAACACTAGGAAATGGACTTGCTACGCCATCTCCATCTTGCTGGTGATCATCATCCTT GTGGTGTTGTTCGTCGTCAAGCCATGGAAGAACAATGGCGGTGGAGGTGGTGGCGGTGGCAATCAATCTGCTCCTGCTCAGACTCAGCCCTCAACGCCAG GAGCGTAG
AA sequence Show only first row Show all	>Lus10016173 pacid=23142739 polypeptide=Lus10016173 locus=Lus10016173.g ID=Lus10016173.BGIv1.0 annot-version=v1.0 MNDLFSGSFSRFRNEDPPSPDHHDHHQTVQMSSQIPPSTTGVNLDKFFQDVETIKEELKDLEKLNSSLQSSHEHSKTLHHAKAVKDLRAQMDSDVSTALK KAKLIKVRLEALDRSNASHRSVPGCGPGSSSDRTRTSVVNGLRKKLKDSMEGFNALRGKISSEYRETVERRYFTVTGENPDDKILDRLISTGESETFLQK AIQEQGRGRVLDTINEIQERHDAVKDMEKNLKELHQVFLDMAVLVEAQGEQLDDIESNMQRASSFVRGGTQQLQTARVLQKNTRKWTCYAISILLVIIIL VVLFVVKPWKNNGGGGGGGGNQSAPAQTQPSTPGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Lus10016173 [exp]	0	1
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Lus10029373 [exp]	1.0	0.9011
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10021012 [exp]	4.2	0.8683
AT4G17070			peptidyl-prolyl cis-trans isom...		Lus10036745 [exp]	4.9	0.8675
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10041683 [exp]	5.1	0.8446
AT1G56130			Leucine-rich repeat transmembr...		Lus10031199 [exp]	5.5	0.8333
AT2G39650			Protein of unknown function (D...		Lus10023412 [exp]	7.3	0.8735
AT5G63140		ATPAP29, PAP29	purple acid phosphatase 29 (.1...		Lus10010289 [exp]	8.5	0.8291
AT2G18680			unknown protein		Lus10015508 [exp]	9.0	0.8187
					Lus10023285 [exp]	9.3	0.8072
AT4G28703			RmlC-like cupins superfamily p...		Lus10014252 [exp]	10.8	0.8154

Compare expression of checked genes

Lus10016173 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.