Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52380 267 / 5e-88 CP33, PDE322 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) AT2G37220 149 / 6e-43 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G52150 147 / 2e-42 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G24770 147 / 2e-41 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT5G50250 145 / 2e-41 CP31B chloroplast RNA-binding protein 31B (.1) AT1G60000 140 / 7e-40 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G35410 116 / 4e-30 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G01080 108 / 2e-27 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G16380 97 / 5e-22 PAB6 poly(A) binding protein 6 (.1) AT3G14100 93 / 6e-21 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029372 [exp] 467 / 1e-166 AT3G52380 269 / 6e-89 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Lus10023191 [exp] 156 / 3e-45 AT3G53460 263 / 2e-87 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10002222 [exp] 155 / 4e-45 AT3G53460 263 / 1e-87 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10026514 [exp] 151 / 1e-43 AT2G37220 284 / 4e-96 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10023723 [exp] 147 / 2e-41 AT1G60000 259 / 1e-85 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10041602 [exp] 139 / 4e-39 AT3G52150 263 / 2e-88 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10013591 [exp] 139 / 2e-38 AT3G52380 130 / 4e-35 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Lus10010262 [exp] 137 / 3e-37 AT3G52150 262 / 5e-86 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10013801 [exp] 139 / 7e-37 AT3G53460 258 / 2e-82 chloroplast RNA-binding protein 29 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G202000 [exp] 272 / 4e-90 AT3G52380 270 / 2e-89 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Potri.016G068300 [exp] 261 / 7e-86 AT3G52380 264 / 5e-87 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Potri.016G090700 [exp] 171 / 2e-51 AT2G37220 302 / 4e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.009G065900 [exp] 155 / 1e-45 AT3G52150 237 / 2e-78 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.008G172100 [exp] 153 / 2e-44 AT1G60000 288 / 5e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G127200 [exp] 149 / 7e-43 AT2G37220 269 / 5e-90 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.010G065600 [exp] 147 / 4e-42 AT1G60000 287 / 9e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.012G090200 [exp] 146 / 2e-41 AT4G24770 310 / 7e-105 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.001G340800 [exp] 145 / 2e-41 AT4G24770 322 / 2e-110 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.015G086500 [exp] 146 / 4e-41 AT4G24770 290 / 6e-97 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10016174 pacid=23142719 polypeptide=Lus10016174 locus=Lus10016174.g ID=Lus10016174.BGIv1.0 annot-version=v1.0 ATGGCAGCTCTATCAATGGTGGCCAGCTCGTCACTTTCTTCGTCTCCGCTTCACGTTACTACGAAAGTCTCCAATCTTCTCTTATCCACCTGCAACACAT CCACCACTGCAAACTTCAGATTGAAGCCATTTCAGCTACCCCTGAAGCCTCTGAAGCTCACTAACAATCACCGTCTCCCACAATCTCGCTTCTATTTATA CGCCGCCGCTGATTCTGACAATTTCGAAGTAGCAGCAGACGACGAAGTCCTCGGCGATGAAAGTGACGACTCGTTCCTCCAAACCGATGATGATGATGAA GAAGAAGCGAATGGAGGAATTCCGGCCGGATCGAGTGGCGCAGGGCGGCTTTACGTCGGGAACCTTCCGTACACGATCACTTCAGAGGAATTGACTGAGA TATTCGCCGAGGCTGGTCGCGTTTCCAGCGTTGAGATTATCTACGATCGGGTGACTGATCGGAGCAGAGGATTCGGCTTTATTACTATGGAAACTGTTGA AGAAGCTAAAACCGCTATTAAAATGTTCAATGATTCACAAGTTGGAGGTCGAAGCGTAAGGGTGAACTTCCCAGAAGTACCGAAAGGAGGCGAGAAGGAA ATGATAGGGTCCAGAGTTATAAGTAACTATCAAGGCTTCATCGACAGTCCTCACAAGGTGTACGCTGGAAATCTTAGTTGGATCGTAACATCGGCAATTC TTAAACAAGCGTTTGCCGAGCAGCCCGGATACTTGAGTGCCAAAGTCTTGTACGAGAGGGATTCAGGACGATCTCGAGGTTTCGGTTTTGTGTCCTTCGA AACTGCCAAGGATGCAGACGCTGCCCTAAACAGCATGAACGGAGTGGAGGTTGAAGGACGTCCTTTACGCTTGAACGTGGCTGCCCCACCAAAGACACCA TACTCGGGTAGATCAGAGTCTAGTCCAACGACGGGTGGCGATAGCAGCGAGCTGCTGTCAAGTATCAGCTCGTAA
AA sequence Show only first row Show all	>Lus10016174 pacid=23142719 polypeptide=Lus10016174 locus=Lus10016174.g ID=Lus10016174.BGIv1.0 annot-version=v1.0 MAALSMVASSSLSSSPLHVTTKVSNLLLSTCNTSTTANFRLKPFQLPLKPLKLTNNHRLPQSRFYLYAAADSDNFEVAADDEVLGDESDDSFLQTDDDDE EEANGGIPAGSSGAGRLYVGNLPYTITSEELTEIFAEAGRVSSVEIIYDRVTDRSRGFGFITMETVEEAKTAIKMFNDSQVGGRSVRVNFPEVPKGGEKE MIGSRVISNYQGFIDSPHKVYAGNLSWIVTSAILKQAFAEQPGYLSAKVLYERDSGRSRGFGFVSFETAKDADAALNSMNGVEVEGRPLRLNVAAPPKTP YSGRSESSPTTGGDSSELLSSISS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52380		CP33, PDE322	PIGMENT DEFECTIVE 322, chlorop...		Lus10016174 [exp]	0	1
AT1G22700			Tetratricopeptide repeat (TPR)...		Lus10021972 [exp]	1.0	0.9649
AT1G22700			Tetratricopeptide repeat (TPR)...		Lus10041265 [exp]	1.7	0.9426
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Lus10038809 [exp]	2.0	0.9390
AT3G53460		CP29	chloroplast RNA-binding protei...		Lus10023191 [exp]	2.4	0.9436
AT1G01080			RNA-binding (RRM/RBD/RNP motif...		Lus10002676 [exp]	2.8	0.9289
AT5G58250		EMB3143	EMBRYO DEFECTIVE 3143, unknown...		Lus10031946 [exp]	3.2	0.9377
AT5G57030		LUT2	LUTEIN DEFICIENT 2, Lycopene b...		Lus10021576 [exp]	6.5	0.9344
AT1G17850			Rhodanese/Cell cycle control p...		Lus10017986 [exp]	7.7	0.9002
AT1G04420			NAD(P)-linked oxidoreductase s...		Lus10010340 [exp]	7.9	0.9222
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015111 [exp]	8.1	0.9261

Compare expression of checked genes

Lus10016174 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.