Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26650 72 / 1e-14 MADS AGL36 AGAMOUS-like 36 (.1) AT5G48670 70 / 7e-14 MADS FEM111, AGL80 AGAMOUS-like 80 (.1) AT5G06500 67 / 3e-13 MADS AGL96 AGAMOUS-like 96 (.1) AT1G65300 66 / 1e-12 MADS AGL38, PHE2 PHERES2, AGAMOUS-like 38 (.1) AT2G40210 66 / 2e-12 MADS AGL48 AGAMOUS-like 48 (.1) AT1G65330 65 / 4e-12 MADS AGL37, PHE1 PHERES1, AGAMOUS-like 37, MADS-box transcription factor family protein (.1) AT3G05860 63 / 5e-12 MADS MADS-box transcription factor family protein (.1.2.3) AT5G27960 63 / 2e-11 MADS AGL90 AGAMOUS-like 90 (.1) AT1G31640 62 / 5e-11 MADS AGL92 AGAMOUS-like 92 (.1) AT1G22590 55 / 2e-09 MADS AGL87 AGAMOUS-like 87 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029367 [exp] 333 / 1e-116 AT5G06500 88 / 1e-20 AGAMOUS-like 96 (.1) Lus10021399 [exp] 93 / 2e-23 AT5G48670 84 / 1e-19 AGAMOUS-like 80 (.1) Lus10004150 [exp] 96 / 4e-23 AT1G65330 84 / 8e-19 PHERES1, AGAMOUS-like 37, MADS-box transcription factor family protein (.1) Lus10014883 [exp] 76 / 2e-16 AT5G48670 114 / 1e-29 AGAMOUS-like 80 (.1) Lus10022316 [exp] 74 / 1e-15 AT5G48670 131 / 2e-36 AGAMOUS-like 80 (.1) Lus10012154 [exp] 72 / 3e-15 AT5G06500 65 / 7e-13 AGAMOUS-like 96 (.1) Lus10014578 [exp] 71 / 3e-14 AT5G48670 182 / 5e-56 AGAMOUS-like 80 (.1) Lus10007592 [exp] 69 / 3e-14 AT5G26650 66 / 8e-13 AGAMOUS-like 36 (.1) Lus10032108 [exp] 67 / 5e-13 AT5G48670 180 / 9e-55 AGAMOUS-like 80 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G201700 [exp] 129 / 1e-34 AT5G48670 120 / 2e-30 AGAMOUS-like 80 (.1) Potri.016G068132 [exp] 123 / 2e-34 AT5G48670 125 / 1e-34 AGAMOUS-like 80 (.1) Potri.005G002400 [exp] 96 / 2e-23 AT5G48670 222 / 4e-71 AGAMOUS-like 80 (.1) Potri.013G018100 [exp] 73 / 3e-15 AT5G48670 187 / 1e-58 AGAMOUS-like 80 (.1) Potri.013G001700 [exp] 63 / 1e-11 AT5G48670 203 / 3e-64 AGAMOUS-like 80 (.1) Potri.013G107600 [exp] 59 / 6e-11 AT1G22590 117 / 9e-34 AGAMOUS-like 87 (.1.2) Potri.007G115000 [exp] 50 / 4e-07 AT2G22540 181 / 9e-57 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Potri.019G076800 [exp] 49 / 8e-07 AT1G71692 237 / 9e-80 XAANTAL1, AGAMOUS-like 12 (.1) Potri.001G328600 [exp] 48 / 1e-06 AT5G60910 136 / 1e-39 FRUITFULL, AGAMOUS-like 8 (.1.2) Potri.002G092300 [exp] 48 / 2e-06 AT1G22130 313 / 1e-105 AGAMOUS-like 104 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10016180 pacid=23142681 polypeptide=Lus10016180 locus=Lus10016180.g ID=Lus10016180.BGIv1.0 annot-version=v1.0 ATGTCGAGGCGGAAGAGGCAGGTGAGGTGGATAGCCAACGATATTGCTCGAAAGGTGTGCTTTCGAAATAGGCGGCTCGGGCTGATCAAGAAAGTGAAGG AGTTGACAACTTTATGTGACATTCCGGGGATGTGTGTGATATACAACCCCGTCGAGGAGTCTTCGCCTCATCAACCATTGCAACCACCGGACCCACCGAT GATTTGGCCATCGCGTGAGGTGGCGGTGCAATTGATGGAGAGGTTCTTGGCCTTGCCGGCCCTGGAGCGGACCAAAAATATGACCAACCAGCTAGGATAT CTACGAGAAGTGGTCATGAAGGCGGATGAGCAACAGAGGCGAGAATCGAAGAAAATACAGAACATGGAGTTCGCATTACTGATGGACGAGGTTCATTACG GGAAGGGGCTGGAAGGGCTAGACATGGAGCAATGCAGAAGCTTGGCTTGGCTTATCCGGGTTAAGATTCAAGAGATTCGGAGGCGAATGGAGTTCCTCGG GGCCACTCAACAGGTGGAGCCACATCATGGTGCGCAGCAGGGGATGAACCAGATTGCCGCAGGGACAATGGACCATCCTATTCATATCGATGAGGATGAT GGTTCCTCATCGTTGTTGGATGGATCTGAAGAAAGTACTGTTGAGAGGGAGTTGGCGCACAAGAAGTATGACGGTACGGATGCGGAGCTTAATCAAGGGA TGAGGATAAAGTGA
AA sequence Show only first row Show all	>Lus10016180 pacid=23142681 polypeptide=Lus10016180 locus=Lus10016180.g ID=Lus10016180.BGIv1.0 annot-version=v1.0 MSRRKRQVRWIANDIARKVCFRNRRLGLIKKVKELTTLCDIPGMCVIYNPVEESSPHQPLQPPDPPMIWPSREVAVQLMERFLALPALERTKNMTNQLGY LREVVMKADEQQRRESKKIQNMEFALLMDEVHYGKGLEGLDMEQCRSLAWLIRVKIQEIRRRMEFLGATQQVEPHHGAQQGMNQIAAGTMDHPIHIDEDD GSSSLLDGSEESTVERELAHKKYDGTDAELNQGMRIK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26650	MADS	AGL36	AGAMOUS-like 36 (.1)		Lus10016180 [exp]	0	1
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10031579 [exp]	1.4	0.9269
AT3G15280			unknown protein		Lus10005404 [exp]	2.4	0.8652
AT3G19920			unknown protein		Lus10010180 [exp]	2.6	0.8379
AT1G30840		ATPUP4	purine permease 4 (.1.2)		Lus10008073 [exp]	3.2	0.8305
AT1G07175			unknown protein		Lus10018252 [exp]	3.5	0.8207
AT1G69480			EXS (ERD1/XPR1/SYG1) family pr...		Lus10004285 [exp]	3.9	0.8429
AT2G29040			Exostosin family protein (.1)		Lus10003440 [exp]	4.0	0.8541
AT1G53440			Leucine-rich repeat transmembr...		Lus10030626 [exp]	5.3	0.7394
AT3G62890			Pentatricopeptide repeat (PPR)...		Lus10033544 [exp]	5.7	0.8694
AT1G45688			unknown protein		Lus10023652 [exp]	6.7	0.7065

Compare expression of checked genes

Lus10016180 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.