Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44150 326 / 8e-114 unknown protein AT3G11800 296 / 1e-101 unknown protein AT2G15910 252 / 7e-83 CSL zinc finger domain-containing protein (.1.2) AT3G48630 0 / 1 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029366 [exp] 473 / 2e-171 AT3G44150 328 / 1e-114 unknown protein Lus10023845 [exp] 265 / 2e-89 AT3G44150 276 / 3e-94 unknown protein Lus10021005 [exp] 263 / 4e-89 AT3G44150 274 / 1e-93 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G068000 [exp] 354 / 7e-125 AT3G44150 342 / 4e-120 unknown protein Potri.006G201600 [exp] 350 / 5e-123 AT3G44150 330 / 2e-115 unknown protein Potri.004G146800 [exp] 263 / 8e-89 AT3G11800 271 / 5e-92 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016181 pacid=23142726 polypeptide=Lus10016181 locus=Lus10016181.g ID=Lus10016181.BGIv1.0 annot-version=v1.0 ATGGCGACGACTACTCCTTTCAACCTCACCCACCTCCTTCTCCTATCTTTAACCCTCTCCTCCTCACTTTTCGCCGCCAAATCGGACGACACAAACCGCG TCTTCTCCCCTTGCGCCGATACCAAGGTACAGTCGTCCGACGGCTACACGTTCGGGATCGTCTTCGCTTCCAGGAGCGCCTTCTATAACAACGGAAACAC TAGCGGCACCCAGCTGTCTCCCTGTGACAGTAGACTCGGCCTCGCCGGGAATGCTCAGATCTCCGTCTTCAGGCCGAAAGTTGATGAGATCTCTCTTCTT ACCATCAACACCTCATCTTTCTCCCCGGACAACGTTGGTGGATATATGGTTGCATTCGGTGGCCGAAAATATGCTGCCAGGTCTCTACCTGCATTCGTCG CAAATGGTACATACACTGTGACAAGTTACACCCTGGTGCTCGAATTCCAGAAAGGCCGGCTGGAAAACCTGTACTGGAAAAGAGACGGTTGTGCGAAATG TGGTGGTCCAAGCAGTCAAGGGATGGTCTGCCTCAACAACCAGGACTGTGCCATCAGAACCTCGAGCTGCAAAAACCATAACGGTAATGTCGATTGCAGC ATAGGGATACAGCTGGCGTTCTCCGGCACAGACAAGCACCTCCGGGTTCTCAACTCGTGGTATGAAGTCGAGAATATGCGGCAGTACTCTCTGTTCAAGC TCTACTCCAATCTCAGGGACTCCTTAACCAGCCAGTACGACTCCATATTCAACTAG
AA sequence Show only first row Show all	>Lus10016181 pacid=23142726 polypeptide=Lus10016181 locus=Lus10016181.g ID=Lus10016181.BGIv1.0 annot-version=v1.0 MATTTPFNLTHLLLLSLTLSSSLFAAKSDDTNRVFSPCADTKVQSSDGYTFGIVFASRSAFYNNGNTSGTQLSPCDSRLGLAGNAQISVFRPKVDEISLL TINTSSFSPDNVGGYMVAFGGRKYAARSLPAFVANGTYTVTSYTLVLEFQKGRLENLYWKRDGCAKCGGPSSQGMVCLNNQDCAIRTSSCKNHNGNVDCS IGIQLAFSGTDKHLRVLNSWYEVENMRQYSLFKLYSNLRDSLTSQYDSIFN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44150			unknown protein		Lus10016181 [exp]	0	1
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10017425 [exp]	1.7	0.9455
AT3G48680		AtCAL2, GAMMACA...	gamma carbonic anhydrase-like ...		Lus10031845 [exp]	2.4	0.9310
AT1G29790			S-adenosyl-L-methionine-depend...		Lus10025384 [exp]	2.4	0.9316
AT2G26110			Protein of unknown function (D...		Lus10024988 [exp]	3.2	0.9004
AT3G45230			hydroxyproline-rich glycoprote...		Lus10037404 [exp]	4.0	0.9207
AT1G08480		SDH6	succinate dehydrogenase 6, unk...		Lus10008448 [exp]	4.2	0.8914
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10026404 [exp]	5.7	0.8809
AT1G29330		ATERD2, AERD2, ...	ARABIDOPSIS THALIANA ENDOPLASM...		Lus10029263 [exp]	7.2	0.8546
AT1G27970		NTF2B	nuclear transport factor 2B (....		Lus10037033 [exp]	8.5	0.8775
AT3G48680		AtCAL2, GAMMACA...	gamma carbonic anhydrase-like ...		Lus10031278 [exp]	9.5	0.8848

Compare expression of checked genes

Lus10016181 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.