Plant FIBer expression Database

Lus10016182 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G49540 141 / 1e-43 Rab5-interacting family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029365
[exp]
212 / 9e-72 AT5G49540 139 / 7e-44 Rab5-interacting family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G102200
[exp]
172 / 4e-56 AT5G49540 171 / 1e-56 Rab5-interacting family protein (.1)
Potri.010G148600
[exp]
169 / 1e-54 AT5G49540 136 / 6e-43 Rab5-interacting family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF07019 Rab5ip Rab5-interacting protein (Rab5ip)
Representative CDS sequence
>Lus10016182 pacid=23142643 polypeptide=Lus10016182 locus=Lus10016182.g ID=Lus10016182.BGIv1.0 annot-version=v1.0
ATGGTTTTCAGCTACTGGAAAGTGATAAGGTCAGGAGTTATGGCTGTCAGACAAGGTGACTCGAGTTCCTCTGAGAAGAAATCGACTGATGCTTTGAATG
ATTTGCAAACCTTCAATGCGGAGAACTTACAAAGTAACTTGAAAGTTATCTATTACAGCCGAACATTTCTTTCAATAATCGGCGGCGTAATTGCTGGAAT
TTTGGGGTTCAAGGGATTGATAGGATTTGTTTTCTATTTCCTCATCATGGCTATAACTTCTGTGGCTCTGGCGGCCAAGGCCAAATTCTCCATTCATTCC
TACTTCGACTCCTGGAATCGAGTTGTGCTTGATGGTTTCTTTGGCGGGCTTATGATACATATTGTCTGTGGCGAAAGTTCCCTTAACCTGAGAATAGATT
TGCATACGACATTGTTCACATATTCTGATGAGGAGCTAGTGCATTCCGATTTCGTCTCTACCTTGAAGGAGCAGCATGAAGAGAGTTGTGTTTTAGGTTC
AAAGTGCCCTAGACAGTGCCAAATCGCTTCAGGAGAGGTTGTGTTTTAG
AA sequence
>Lus10016182 pacid=23142643 polypeptide=Lus10016182 locus=Lus10016182.g ID=Lus10016182.BGIv1.0 annot-version=v1.0
MVFSYWKVIRSGVMAVRQGDSSSSEKKSTDALNDLQTFNAENLQSNLKVIYYSRTFLSIIGGVIAGILGFKGLIGFVFYFLIMAITSVALAAKAKFSIHS
YFDSWNRVVLDGFFGGLMIHIVCGESSLNLRIDLHTTLFTYSDEELVHSDFVSTLKEQHEESCVLGSKCPRQCQIASGEVVF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G49540 Rab5-interacting family protei... Lus10016182
[exp]
0 1
AT3G18165 MOS4 modifier of snc1,4 (.1) Lus10018001
[exp]
4.5 0.7852
AT1G03150 Acyl-CoA N-acyltransferases (N... Lus10022048
[exp]
4.9 0.7841
AT4G35540 zinc ion binding;transcription... Lus10030407
[exp]
6.0 0.7098
AT2G39960 Microsomal signal peptidase 25... Lus10014838
[exp]
6.9 0.7644
AT4G38500 Protein of unknown function (D... Lus10025082
[exp]
9.4 0.7282
AT1G56590 ZIP4 ZIG SUPPRESSOR 4, Clathrin ada... Lus10031432
[exp]
12.7 0.7659
AT4G39150 DNAJ heat shock N-terminal dom... Lus10028809
[exp]
14.3 0.7509
AT2G39960 Microsomal signal peptidase 25... Lus10009885
[exp]
14.8 0.6907
AT2G39630 Nucleotide-diphospho-sugar tra... Lus10040296
[exp]
17.1 0.7500
AT5G59613 unknown protein Lus10040848
[exp]
17.7 0.6898

Lus10016182 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.