Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11760 744 / 0 unknown protein AT5G04860 569 / 0 unknown protein AT2G10560 238 / 3e-73 unknown protein AT2G25460 122 / 1e-29 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029364 [exp] 1179 / 0 AT3G11760 733 / 0.0 unknown protein Lus10021254 [exp] 924 / 0 AT3G11760 793 / 0.0 unknown protein Lus10013598 [exp] 911 / 0 AT3G11760 759 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G201200 [exp] 817 / 0 AT3G11760 818 / 0.0 unknown protein Potri.016G067600 [exp] 806 / 0 AT3G11760 803 / 0.0 unknown protein Potri.010G244100 [exp] 681 / 0 AT3G11760 657 / 0.0 unknown protein Potri.008G015700 [exp] 666 / 0 AT3G11760 665 / 0.0 unknown protein Potri.018G027200 [exp] 330 / 4e-104 AT3G11760 327 / 5e-103 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016183 pacid=23142702 polypeptide=Lus10016183 locus=Lus10016183.g ID=Lus10016183.BGIv1.0 annot-version=v1.0 ATGGTGGTGAAGATGATGCGGTGGCCCTGGCCGCCTTTAGTGTCGAAGAAATTCGACGTCACTCTGGTCGTCAAGAGATTGGAAGGGCTGGATCTAGCCG CCGGAGAAAAATTAACGGTGGAGATCCGCTGGAAAGGCCCCAAATTTGCTCTAGGTTCGTTCCGGCGGAGGGTTAAAAGAAGCTTCACTCAAGAAGCGGC GGCGGCGGTAATCGGGGACGGCTCTCTTTCTTCCTCCGATGAGGAAACCGGCACCGGAAACGGCGGCGGCGTGACGGCTGAGTGGAATGAGGAGTTTCAC AATATATGTGCTTTGTCGCCTTACAAAGAGAACGCCTTCCACCCGTGGGAGATCGCTTTCTCCGTTTTCAATGATATGAACCAAGTGCCAAAGAAAAAAG TGTCTCCAATTGGAACAGCATTGCTCAACCTTGCTGAGTTTGCCTCTAGAGCTGGAGGGGATCAGTTCGAATTGAGCCTCCCTCTCGTCCCTGGTACCGA TCGCCATGCCTCGCTTTCGATATCACTCAGCTTGTTGGAACTACGAATCACTCCCGAAACGCTGATTCCTGTCGCGTTGTCGTCGCCTCGATCAGTTGAA AACGGGAAGGAGGAGGTATCTGCGATTAAAGCCGGTCTAAGAAAGGTTAAGATTTTCAAGGACTATGTATCGATCCAGAGGGTGAAGAAGAAGCCCTACC GTGAGGAAGAAGGTGGTAGTGAAGGAAGGTCTTCTTCCAGGAGTGAAGATGGAGAGTATAACTATTACCCCTTCGACTCCGATTCGCTAGATGATTTCGA GGAAGGAGAATCGGACGAGGTCCCTAGTGTTAGGAAGTCTTTCAGCTACGGTTCGCTAGCTTACGCTAATGGCCTCGGTGGATCGTCCTACTACAATGTT GGAAGAAATGATCTTGATGAGGATTGGGTTTACTACAGCAACCGGAAATCGGACGTGGGAAGCTCCTCCCAAATTAGCGATATGGATCCCCCTGTATCCG AACCGCTGTCACCATCACCGCAACTGCAAAGTTCGAGACGAATTATGTTGCCTTGGAGGAAAAGGAAGATGAGCTTCCGGTCTCCGAAAGGTAAAGGAGA GCCGTTGTTGAAGAAGACTTATGGAGAAGAAGGTGGTGATGATATCGATTTCGATCGTCGACAGCTTAGTTCTGATGAAGCTCGGCGGAAGGCGGAGGAG GATTCATCTGCGAACCGGTCGTCCGTGTCTGATTTTGGAGACGATAGCTTTGCTGTCGGGAGCTGGGAGCGGGAAGAAGTAGTGAGCCGGGATGGCAACA TGAAGCTTCAAGCCGAAGTCTTTTTTGCTTCGATCGATCAAAGAAGCGAGCGGGCAGCTGGCGAGAGTGCTTGCACAGCTCTCGTGGCTGTGATCGCCGA CTGGTTCCAGTGCAACCGGGACGCGATGCCTATAAAGTCGCAGTTCGACAGTTTGATTCGAGACGGATCGCTAGAATGGAGGAAGCTCTGCGAGAACGAA ACGTACATGGAGCGGTTTCCCGACAAGCACTTCGACCTCGAAACGGTTCTCCAGGCAGCCAAAATCCGTCCGCTCTCGGTGGTTGCTGGGAAATCGTTCG TCGGGTTCTTCCATATGGACGAGGCCGGATTCGACTTCTTACACGGGGCTATGTCTTTCGACAACATTTGGGACGAGATTGGCAGCAACGGTGAAGATGA AGAACCGCATTTATACATTGTCAGTTGGAATGACCATTTTTTCGTCCTGAAAATCGAGCATGATGCTTACTACATAATCGACACCTTGGGGGAGCGGCTG TTCGAAGGATGCAATCAGGCGTACATTCTCAAGTTTGACAAAGGTACCGTTATTCGCAAAATGCCAGACGAGTCGGAGGATGCAACGAAGACCAAGGAAG AAGGCGAAGTGGTGTGCCGAGGGAAAGACTCGTGCAAGGAATACATAAAGAGCTTCTTGGCGGCTATACCGATTAGGGAAATGCAGGCGGACATCAAGAA AGGTCTCATGGCGTCTACGCCTGTTCATCAGCGATTGCAGATCGAGTTCCACTACACTACTACGATAGAACCGACCCTTGAATCTGACCAATAA
AA sequence Show only first row Show all	>Lus10016183 pacid=23142702 polypeptide=Lus10016183 locus=Lus10016183.g ID=Lus10016183.BGIv1.0 annot-version=v1.0 MVVKMMRWPWPPLVSKKFDVTLVVKRLEGLDLAAGEKLTVEIRWKGPKFALGSFRRRVKRSFTQEAAAAVIGDGSLSSSDEETGTGNGGGVTAEWNEEFH NICALSPYKENAFHPWEIAFSVFNDMNQVPKKKVSPIGTALLNLAEFASRAGGDQFELSLPLVPGTDRHASLSISLSLLELRITPETLIPVALSSPRSVE NGKEEVSAIKAGLRKVKIFKDYVSIQRVKKKPYREEEGGSEGRSSSRSEDGEYNYYPFDSDSLDDFEEGESDEVPSVRKSFSYGSLAYANGLGGSSYYNV GRNDLDEDWVYYSNRKSDVGSSSQISDMDPPVSEPLSPSPQLQSSRRIMLPWRKRKMSFRSPKGKGEPLLKKTYGEEGGDDIDFDRRQLSSDEARRKAEE DSSANRSSVSDFGDDSFAVGSWEREEVVSRDGNMKLQAEVFFASIDQRSERAAGESACTALVAVIADWFQCNRDAMPIKSQFDSLIRDGSLEWRKLCENE TYMERFPDKHFDLETVLQAAKIRPLSVVAGKSFVGFFHMDEAGFDFLHGAMSFDNIWDEIGSNGEDEEPHLYIVSWNDHFFVLKIEHDAYYIIDTLGERL FEGCNQAYILKFDKGTVIRKMPDESEDATKTKEEGEVVCRGKDSCKEYIKSFLAAIPIREMQADIKKGLMASTPVHQRLQIEFHYTTTIEPTLESDQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11760			unknown protein		Lus10016183 [exp]	0	1
AT5G51670			Protein of unknown function (D...		Lus10031691 [exp]	6.5	0.7593
AT2G17200		DSK2	ubiquitin family protein (.1)		Lus10014433 [exp]	13.8	0.7414
AT1G19310			RING/U-box superfamily protein...		Lus10010791 [exp]	26.0	0.7101
AT5G51670			Protein of unknown function (D...		Lus10031110 [exp]	28.1	0.7015
AT4G08330			unknown protein		Lus10025667 [exp]	29.3	0.7297
AT2G01650		PUX2	plant UBX domain-containing pr...		Lus10034612 [exp]	42.1	0.7069
AT5G64660		ATCMPG2	"CYS, MET, PRO, and GLY protei...		Lus10005810 [exp]	42.1	0.6972
AT3G46450			SEC14 cytosolic factor family ...		Lus10004953 [exp]	48.4	0.7040
AT1G66340		AtETR1, EIN1, E...	ETHYLENE RESPONSE 1, ETHYLENE ...		Lus10020778 [exp]	81.0	0.6793
AT3G01690			alpha/beta-Hydrolases superfam...		Lus10000544 [exp]	121.5	0.6688

Compare expression of checked genes

Lus10016183 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.