Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06440 135 / 2e-37 unknown protein AT3G11720 114 / 7e-29 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029362 [exp] 325 / 2e-111 AT5G06440 348 / 3e-117 unknown protein Lus10021251 [exp] 194 / 1e-57 AT5G06440 372 / 3e-122 unknown protein Lus10013601 [exp] 192 / 6e-57 AT5G06440 370 / 2e-121 unknown protein Lus10029361 [exp] 137 / 4e-37 AT5G06440 331 / 8e-108 unknown protein Lus10016186 [exp] 111 / 6e-28 AT5G06440 306 / 1e-98 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G201000 [exp] 174 / 6e-50 AT5G06440 390 / 6e-129 unknown protein Potri.016G067000 [exp] 173 / 2e-49 AT5G06440 370 / 6e-120 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016185 pacid=23142709 polypeptide=Lus10016185 locus=Lus10016185.g ID=Lus10016185.BGIv1.0 annot-version=v1.0 ATGGATAAGAAAGGTGAAATCTCGCTGTATAGAGCGAGGTTGGACAAGTCTTTGGCATCTCCTCAGCTGACAGATTATGGAGCTCTTAAATGTCTAGTGA GAGATCAAATGCTTCAGTCTAGACTTGATGAAACTGAAGCTTGTAGTGAGAAGCTGCTGGAGAAAAGGACTGCTGAAGTGTCCAACTTTCTTGGCATGTT GAGGAGTGCTTCAAATGGTGGGAAAGAATCATTGAAGAACAATGAGCCATCTTCTGGTGAATGGAAAGTCCCTGATTTGGAGACCATTGATGTAAATACT CATGGATTTACCAAAGATGGAATACCTGCAGCACGGGATGTGGTAAGGGCGGATTTGGTGGGTGGATTTGCTTTACAGAAGGTTACTTCGACGAGAAGTT ACTTCCGGACTATTGCTGCCGCGGACCTGAAGTTTGATTTCATTCCTCCAACTCTGATTAATTTTATCTCAAGACAGCTCATTGGAAGTGGTTTCGAACT ATATCAGAAGGCAGTGACTACCTTATATAAGGATGATGAAGACTATGTCCAGGCACTGGCAAATCCATTCTACACTCGAATGCGAGAGGCTATCTATGCT ACTGATGATGTGGACGAGTCTTTACCGGCGAGAGGATATACAACAGAACAGAAAGTAGATGAGACTGAAGGATATAGTCAATCTTCCGACAAAGGTATTG GTCAACCTCCTGCTTTGACAGAACGACGGTTCAAATTCTCAAAAAGGGTTCTGTAA
AA sequence Show only first row Show all	>Lus10016185 pacid=23142709 polypeptide=Lus10016185 locus=Lus10016185.g ID=Lus10016185.BGIv1.0 annot-version=v1.0 MDKKGEISLYRARLDKSLASPQLTDYGALKCLVRDQMLQSRLDETEACSEKLLEKRTAEVSNFLGMLRSASNGGKESLKNNEPSSGEWKVPDLETIDVNT HGFTKDGIPAARDVVRADLVGGFALQKVTSTRSYFRTIAAADLKFDFIPPTLINFISRQLIGSGFELYQKAVTTLYKDDEDYVQALANPFYTRMREAIYA TDDVDESLPARGYTTEQKVDETEGYSQSSDKGIGQPPALTERRFKFSKRVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11720			Polyketide cyclase/dehydrase a...		Lus10016185 [exp]	0	1
AT5G06440			unknown protein		Lus10016186 [exp]	1.0	0.9083
AT2G18245			alpha/beta-Hydrolases superfam...		Lus10041762 [exp]	10.6	0.8720
AT5G06270			unknown protein		Lus10029413 [exp]	12.1	0.8642
AT1G06820		CCR2, CRTISO	CAROTENOID AND CHLOROPLAST REG...		Lus10016199 [exp]	12.6	0.8192
AT5G41050			Pollen Ole e 1 allergen and ex...		Lus10032018 [exp]	14.3	0.8559
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Lus10017513 [exp]	17.7	0.8508
AT5G60970	TCP	TCP5	TEOSINTE BRANCHED 1, cycloidea...		Lus10017856 [exp]	21.1	0.8579
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Lus10016685 [exp]	21.6	0.8639
AT5G43270	SBP	SPL2	squamosa promoter binding prot...		Lus10021614 [exp]	22.6	0.8554
AT5G39790			5'-AMP-activated protein kinas...		Lus10028512 [exp]	26.5	0.8507

Compare expression of checked genes

Lus10016185 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.