Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06440 306 / 1e-98 unknown protein AT3G11720 271 / 2e-84 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029361 [exp] 805 / 0 AT5G06440 331 / 8e-108 unknown protein Lus10029362 [exp] 355 / 6e-119 AT5G06440 348 / 3e-117 unknown protein Lus10021251 [exp] 357 / 7e-116 AT5G06440 372 / 3e-122 unknown protein Lus10013601 [exp] 355 / 4e-115 AT5G06440 370 / 2e-121 unknown protein Lus10016185 [exp] 112 / 1e-27 AT3G11720 136 / 1e-37 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G201000 [exp] 370 / 9e-121 AT5G06440 390 / 6e-129 unknown protein Potri.016G067000 [exp] 372 / 4e-120 AT5G06440 370 / 6e-120 unknown protein Potri.018G115200 [exp] 53 / 7e-09 ND / Potri.005G020350 [exp] 46 / 2e-06 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016186 pacid=23142712 polypeptide=Lus10016186 locus=Lus10016186.g ID=Lus10016186.BGIv1.0 annot-version=v1.0 ATGGACAAGGGTGGGAAGTTTTATGAGTACAGGGAGAGACTGGACAAGACGCTGGCTTCTCCTGAGTTAACAGATCTTGATGCACTCAAAGCACTCATTA GCAAGCAGCTCCAAGGATCGAACAAGGAAGTGTTAGAGAAAAGGGCAACTGAGGCATCCGATTTTCTTGATATGCTGAGGAGTGCTGCTGTGAGTGGAAC CGAGGATTCGAGCAAGACCAAAGCAGCATCAGTAGGGGAATGGAATTTGAAAGAAAGTAACAAAGAGTATCGTGTCATGTATCGCAAAGGACCACAGGGT ACACCAATGCATACACTGTTTGTCGAAGGTTATGTAGACGGACCTATTGAATCATGTTTATGTATTGGTTGGGAGACCACTCTGTACAACAAATGGTGGC CACAGCTTAGTTTCCCTAACTTCAAGATTTCTATGTCCAAAAGCTTACAGAATGTTCAGTTTGGGGAGCAGGTTTCTCTACTGAGGGTGAAAATCACATG GCCACTGTCAGCAAGGGAGATTGTTCTGCATTATTTTATGTTTGAGTATCTCCAAGAGGGTCTGGTTGTTGTTCTTCTGAACTCGATCTCAGATTCGGAG AACCTTGATGTAACGACTCATGGCTTCACCAGAGAGGGAATCCCTGAACCTGAGGAAGTAGTAAGAATAGACTTGGTGGGTGGATTCGCCATGCAGGGAG TCAACTCCGAGCGAAGTTATGTATGCCTCATAGGAAACATTGACTTCAAGCTGGATTTGGTGCCTTCATCACTTATAAACTTTGTGGCAAGGCAGGCAGT GGTCTCTACATCTAAGCGCGACGAGGACTATGTCAAGGCCTTGAAGGATCCAATGTATGCTAGGTTACGCGATATCTTCCACGAATTCTCCAGTAACGAA CGACGTGATCCTAGCTTGACGAATGAACACCACGCAGATGCTCTAAATGTCATCATGGATGAGAAGGATCATACCGATGCCAAGGAAGAAAAGAGCAAAC CTTCGAACGATGAAGATGACATGTCATCGTCACATGAAACTGACTCTGAAAATGCATATGAACAGAAGTTTCATCGCCAGTATGGAGCTCTCCCAATCTG TCCCGACATAATACTAGCATTCGCTTCGTTGGAGAGAGCTACATCGTCGGTCAAGAGATATGGAGTCAATGTGTTGACCAGGTCATTCTCCAGAGTAATT GTCGTTAACCCAGATGCTCCGATGGAAGAAGATAAGACTCCAAAGTTGGAAGCAACCCTTTCAAAAGATGGAGGTGTTGAAGGCATTGCTGATCATGAAG TAGTATCTGATAGCTTCATGGAGAATGCTCCTGCTCCCATAAATTGTCCTCTTGGCAACCACAAAAGAATGAAATCAGAGATAAAAAAAAGTGATGGTGC AATTGAGAAGCCCGACAGGCTACGCGGGCCCGAGAGCCAACGGCCCGTAATCCTTCCACTGACAAGAGAGGGAGGTGATCGCTGCTCTGTGAAACCAGCC TCACGCATTGCCCTCCGCTCTACGGGCCAAGCCATCTCAGACTTCTCCGAGAAACCCAAGCCACACTCCAGCCTTGGAACGGACGAGCCAGAGATCTGA
AA sequence Show only first row Show all	>Lus10016186 pacid=23142712 polypeptide=Lus10016186 locus=Lus10016186.g ID=Lus10016186.BGIv1.0 annot-version=v1.0 MDKGGKFYEYRERLDKTLASPELTDLDALKALISKQLQGSNKEVLEKRATEASDFLDMLRSAAVSGTEDSSKTKAASVGEWNLKESNKEYRVMYRKGPQG TPMHTLFVEGYVDGPIESCLCIGWETTLYNKWWPQLSFPNFKISMSKSLQNVQFGEQVSLLRVKITWPLSAREIVLHYFMFEYLQEGLVVVLLNSISDSE NLDVTTHGFTREGIPEPEEVVRIDLVGGFAMQGVNSERSYVCLIGNIDFKLDLVPSSLINFVARQAVVSTSKRDEDYVKALKDPMYARLRDIFHEFSSNE RRDPSLTNEHHADALNVIMDEKDHTDAKEEKSKPSNDEDDMSSSHETDSENAYEQKFHRQYGALPICPDIILAFASLERATSSVKRYGVNVLTRSFSRVI VVNPDAPMEEDKTPKLEATLSKDGGVEGIADHEVVSDSFMENAPAPINCPLGNHKRMKSEIKKSDGAIEKPDRLRGPESQRPVILPLTREGGDRCSVKPA SRIALRSTGQAISDFSEKPKPHSSLGTDEPEI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06440			unknown protein		Lus10016186 [exp]	0	1
AT3G11720			Polyketide cyclase/dehydrase a...		Lus10016185 [exp]	1.0	0.9083
AT1G01440			Protein of unknown function (D...		Lus10001910 [exp]	1.4	0.8821
AT1G33970			P-loop containing nucleoside t...		Lus10009482 [exp]	3.0	0.8729
AT2G03810			18S pre-ribosomal assembly pro...		Lus10036829 [exp]	7.5	0.8195
AT5G10140	MADS	FLF, AGL25, FLC	FLOWERING LOCUS F, FLOWERING L...		Lus10015766 [exp]	8.3	0.8474
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Lus10032292 [exp]	15.5	0.8234
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Lus10041888 [exp]	19.8	0.8554
AT1G74920		ALDH10A8	aldehyde dehydrogenase 10A8 (....		Lus10004239 [exp]	20.8	0.8723
AT4G37070		AtPLAIVA, PLP1,...	phospholipase A IVA, Acyl tran...		Lus10019637 [exp]	21.0	0.8726
AT5G25620		YUC6	YUCCA6, Flavin-binding monooxy...		Lus10024023 [exp]	23.2	0.8158

Compare expression of checked genes

Lus10016186 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.