Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09790 172 / 6e-53 COBL6 COBRA-like protein 6 precursor (.1) AT3G02210 159 / 1e-47 COBL1 COBRA-like protein 1 precursor (.1) AT3G29810 150 / 2e-44 COBL2 COBRA-like protein 2 precursor (.1) AT5G15630 148 / 7e-44 IRX6, COBL4 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT5G60920 147 / 3e-43 COB COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029360 [exp] 227 / 5e-74 AT1G09790 499 / 7e-176 COBRA-like protein 6 precursor (.1) Lus10007217 [exp] 192 / 2e-60 AT1G09790 471 / 1e-164 COBRA-like protein 6 precursor (.1) Lus10034666 [exp] 157 / 3e-47 AT5G15630 627 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10017866 [exp] 155 / 3e-46 AT5G15630 625 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10012598 [exp] 154 / 8e-46 AT3G02210 697 / 0.0 COBRA-like protein 1 precursor (.1) Lus10034379 [exp] 153 / 1e-45 AT3G02210 685 / 0.0 COBRA-like protein 1 precursor (.1) Lus10017863 [exp] 152 / 6e-45 AT5G15630 717 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10034670 [exp] 151 / 8e-45 AT5G15630 715 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10035131 [exp] 147 / 3e-43 AT5G15630 704 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G219200 [exp] 180 / 6e-56 AT1G09790 511 / 2e-180 COBRA-like protein 6 precursor (.1) Potri.004G117100 [exp] 153 / 1e-45 AT3G02210 724 / 0.0 COBRA-like protein 1 precursor (.1) Potri.015G060200 [exp] 153 / 2e-45 AT5G15630 669 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.015G060100 [exp] 150 / 2e-44 AT5G15630 739 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G117200 [exp] 149 / 3e-44 AT5G15630 679 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.015G060000 [exp] 142 / 3e-41 AT5G60920 759 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.017G098600 [exp] 135 / 5e-39 AT5G60920 601 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.012G062200 [exp] 130 / 4e-37 AT5G15630 586 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.017G098700 [exp] 127 / 5e-36 AT5G60920 614 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G167100 [exp] 112 / 4e-30 AT3G29810 407 / 2e-139 COBRA-like protein 2 precursor (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016187 pacid=23142663 polypeptide=Lus10016187 locus=Lus10016187.g ID=Lus10016187.BGIv1.0 annot-version=v1.0 ATGAAGAACTACTCTCAGTGGAACTTAGTAATCTTGCACCCGAATTTGAAGAACATCACTCAAGTGTTCAGCTTTAACTATGCCCCCCTCGACAAGTTTC GCTACACCAATGACAGTGGGATGTTCTGGGGTGTGAAATTCTACAACGACGTGCTGTTGCAAGAAGGGGAGAGCGGGAATGTTCAGAGCGAGATGCTGCT GGCGAAAGAGGCAGGGATTTTTAGTTTCAGGGAAGGATGGGCTTTTCCGAGGAGGATTTTGTTCAATGGAGATGAATGTGTAATGCCATCTCCAGATAAC TATCCAAGGCTCCCAAATACATCTCCTCCACTAATTTCCTCTTCCATTCTGTCCTTAATCTCCATTTTTCTCTTCTTCTGCTTCTTGATCGATTGA
AA sequence Show only first row Show all	>Lus10016187 pacid=23142663 polypeptide=Lus10016187 locus=Lus10016187.g ID=Lus10016187.BGIv1.0 annot-version=v1.0 MKNYSQWNLVILHPNLKNITQVFSFNYAPLDKFRYTNDSGMFWGVKFYNDVLLQEGESGNVQSEMLLAKEAGIFSFREGWAFPRRILFNGDECVMPSPDN YPRLPNTSPPLISSSILSLISIFLFFCFLID

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09790		COBL6	COBRA-like protein 6 precursor...		Lus10016187 [exp]	0	1
AT1G03220			Eukaryotic aspartyl protease f...		Lus10041226 [exp]	1.0	0.8681
AT2G30300			Major facilitator superfamily ...		Lus10015470 [exp]	4.5	0.7946
					Lus10027544 [exp]	7.7	0.7570
AT1G60590			Pectin lyase-like superfamily ...		Lus10030604 [exp]	16.3	0.7765
AT2G48020			Major facilitator superfamily ...		Lus10027977 [exp]	19.5	0.8551
AT1G03890			RmlC-like cupins superfamily p...		Lus10003554 [exp]	25.0	0.8041
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Lus10003263 [exp]	26.2	0.6873
AT1G10522			unknown protein		Lus10030652 [exp]	31.5	0.6728
					Lus10014949 [exp]	32.7	0.8034
AT1G08590			Leucine-rich receptor-like pro...		Lus10002754 [exp]	39.5	0.7440

Compare expression of checked genes

Lus10016187 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.