Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09790 302 / 1e-100 COBL6 COBRA-like protein 6 precursor (.1) AT3G02210 293 / 5e-97 COBL1 COBRA-like protein 1 precursor (.1) AT3G29810 291 / 3e-96 COBL2 COBRA-like protein 2 precursor (.1) AT5G60920 280 / 6e-92 COB COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT5G15630 273 / 1e-89 IRX6, COBL4 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT5G60950 131 / 5e-37 COBL5 COBRA-like protein 5 precursor (.1) AT4G16120 87 / 7e-19 ATSEB1, COBL7 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) AT4G27110 83 / 1e-17 COBL11 COBRA-like protein 11 precursor (.1) AT5G49270 81 / 7e-17 DER9, MRH4, SHV2, COBL9 SHAVEN 2, MUTANT ROOT HAIR 4, DEFORMED ROOT HAIRS 9, COBRA-LIKE 9, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT3G20580 72 / 5e-14 COBL10 COBRA-like protein 10 precursor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029360 [exp] 576 / 0 AT1G09790 499 / 7e-176 COBRA-like protein 6 precursor (.1) Lus10007217 [exp] 427 / 9e-150 AT1G09790 471 / 1e-164 COBRA-like protein 6 precursor (.1) Lus10012598 [exp] 281 / 1e-92 AT3G02210 697 / 0.0 COBRA-like protein 1 precursor (.1) Lus10021144 [exp] 278 / 5e-91 AT5G60920 749 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10007986 [exp] 278 / 6e-91 AT5G60920 755 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10034379 [exp] 276 / 3e-90 AT3G02210 685 / 0.0 COBRA-like protein 1 precursor (.1) Lus10034666 [exp] 275 / 1e-89 AT5G15630 627 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10034670 [exp] 274 / 2e-89 AT5G15630 715 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10034671 [exp] 278 / 3e-89 AT5G60920 732 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G219200 [exp] 372 / 2e-128 AT1G09790 511 / 2e-180 COBRA-like protein 6 precursor (.1) Potri.004G117100 [exp] 297 / 1e-98 AT3G02210 724 / 0.0 COBRA-like protein 1 precursor (.1) Potri.015G060000 [exp] 283 / 6e-93 AT5G60920 759 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.017G098700 [exp] 275 / 3e-90 AT5G60920 614 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.015G060100 [exp] 273 / 3e-89 AT5G15630 739 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.015G060200 [exp] 271 / 1e-88 AT5G15630 669 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.012G062200 [exp] 263 / 1e-85 AT5G15630 586 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.017G098600 [exp] 259 / 2e-84 AT5G60920 601 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G117200 [exp] 251 / 9e-81 AT5G15630 679 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G167100 [exp] 223 / 1e-69 AT3G29810 407 / 2e-139 COBRA-like protein 2 precursor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04833 [flax] [poplar] COBRA COBRA-like protein
Representative CDS sequence Show only first row Show all	>Lus10016188 pacid=23142700 polypeptide=Lus10016188 locus=Lus10016188.g ID=Lus10016188.BGIv1.0 annot-version=v1.0 ATGGCGGCCATGGGTTTAGTCTGGGTTTTGTTCTTCATCTTCATCATCGTCTCTTCTTCTCCTTCTTATGGGTATGATCCGTTAGATCCGGCAGCCAACA TAACGATCAAATGGGATCTCTTGGTCTCATCCCCTGGCGTTAATAGCGTGAAGGTATCAATACTGAACTACCAGCAATACAGGCACATAGAGGCGCCAGG GTGGAGGCTAGGGTGGGACTGGAAAGGCAAAGAGGCCATATCCGGCATGAACGGAGCCGAAGCTACTCAGCAAGGTGACTGCTCCAGATTCAAGGGCCAA CCCCCTCCTCATTGTTGCGATAAGCATCCCGTAATCGTCGATCTATTGCGCGGAGCTCCCTACAATATGCAGTCTCAAAACTGCTGCAAGGGAGGAGTCC TCTCGTCCATGACACAGGACACTTCCAACTACGCTTCCTCTTTCCAGATGACCGTCATCGGAGGAGGCTCCACAGACTCCGAGTTCGAAATGCCCGAGAA TTTCACGCTCGGATTGCCTGGATACACTTGTGGAAATGCTACTCTAGTCAGTCCCACAAGGATCCCCTCCGATGGTGGCCGCCGGTGGACTCAAGTCCTC AAGACTTGGAAAACAATATGCAGCTACTCACTGTTCATAGCATCACCTTCACCAAAATGCTGTGTTTCATTGTCAGCTTTCTACGACAGTACAATAGTTC CTTGCACAAAATGCAGCTGTGGGTGTCAAGGTGCTCACCGTGGAGCTAAATGTGCCAAGGTGTCGGAGAAGGTATCGGTTCTGCAACAAAGGCACGATCC AACAGTAGAGCCGCCGCCATTCGTGAGATGCACAGAGCATATGTGCCCGGTACGGATCCATTGGCACGTAAAAGAGAGTTGTAAAAGTATTGGAGAGTGA
AA sequence Show only first row Show all	>Lus10016188 pacid=23142700 polypeptide=Lus10016188 locus=Lus10016188.g ID=Lus10016188.BGIv1.0 annot-version=v1.0 MAAMGLVWVLFFIFIIVSSSPSYGYDPLDPAANITIKWDLLVSSPGVNSVKVSILNYQQYRHIEAPGWRLGWDWKGKEAISGMNGAEATQQGDCSRFKGQ PPPHCCDKHPVIVDLLRGAPYNMQSQNCCKGGVLSSMTQDTSNYASSFQMTVIGGGSTDSEFEMPENFTLGLPGYTCGNATLVSPTRIPSDGGRRWTQVL KTWKTICSYSLFIASPSPKCCVSLSAFYDSTIVPCTKCSCGCQGAHRGAKCAKVSEKVSVLQQRHDPTVEPPPFVRCTEHMCPVRIHWHVKESCKSIGE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09790		COBL6	COBRA-like protein 6 precursor...		Lus10016188 [exp]	0	1
AT5G08640		ATFLS1, FLS	flavonol synthase 1 (.1.2)		Lus10025619 [exp]	2.4	0.9367
AT1G18790		AtRKD1, RKD1	RWP-RK domain containing 1, RW...		Lus10019100 [exp]	3.5	0.9367
AT1G61680		ATTPS14	terpene synthase 14 (.1.2)		Lus10040632 [exp]	4.2	0.9367
AT2G32300		UCC1	uclacyanin 1 (.1)		Lus10007025 [exp]	4.9	0.9347
AT4G33550			Bifunctional inhibitor/lipid-t...		Lus10005010 [exp]	5.5	0.9190
AT4G21330	bHLH	bHLH022, DYT1	DYSFUNCTIONAL TAPETUM 1, basic...		Lus10007618 [exp]	6.0	0.9068
					Lus10016947 [exp]	6.3	0.7294
AT1G27060			Regulator of chromosome conden...		Lus10012474 [exp]	9.5	0.7743
					Lus10000749 [exp]	10.6	0.8681
AT2G39040			Peroxidase superfamily protein...		Lus10041250 [exp]	10.6	0.8890

Compare expression of checked genes

Lus10016188 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.