Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06410 202 / 3e-64 DNAJ heat shock N-terminal domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029359 [exp] 337 / 9e-117 AT5G06410 265 / 6e-89 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10033940 [exp] 144 / 1e-43 AT5G06410 106 / 8e-30 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10026975 [exp] 140 / 2e-42 AT5G06410 100 / 2e-27 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10002355 [exp] 42 / 0.0003 AT4G13830 139 / 2e-41 DNAJ-like 20 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G200900 [exp] 212 / 9e-68 AT5G06410 253 / 3e-84 DNAJ heat shock N-terminal domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0392 [flax] [poplar] PF07743 [flax] [poplar] HSCB_C HSCB C-terminal oligomerisation domain
Representative CDS sequence Show only first row Show all	>Lus10016189 pacid=23142736 polypeptide=Lus10016189 locus=Lus10016189.g ID=Lus10016189.BGIv1.0 annot-version=v1.0 ATGTCGACGGTAAAGAAGCTAACTTCAGCAGCTCTCCCGCAAATTCTTCGTCGGAGATCTCTCTCGTCGACGTCGATGACGGCTTTTCCACCACTCTTTA ATTCACCTCCTTCCCCGCTTCAACTCCCTTCTCCTTTCCCTGCCTCCACTTTCCCTAATTCCACCACAGCTCACTTCCTCCTAAACCCTCGGATATTCCC CAGCAGTAGTTTTCTCTGCTCTCAATCTTCACCGCAAGTTACTGATTCCTCCAGATGCTGGAATTGCAACAACGGTCAGCCTGAAAGAGGATTATTCTTG GTCTGCAATTCCTGCAGTGCAATCCAGCCAGTGGATCGCTCTCTGAACTACTTCCGATTATTTGGACTAGAGAAGAAGTATGAGATCGAGGATGGTAATT TGCACGATAAGTATAAAGACTGGCAGAAGAAGTTGCATCCTGATTTGGTTCATTCCAAGTCTGAGAAGGAGAGGGAGTTTGCTCGAGAGCAGTCGGCTCG AGTTGGGGATGCGTATCGCACTCTGGCCAATCCTCGGATTAGAGCAATGTACATTCTGAAACTTGTGGGTGTGGATGTGAATGAAGAAGAAACCATCTCA GACCCCGAGTTACTACTTGAGATTCTTCAATCTGATTTCCACAAGCAGATAATGGAGATTAGAGAAGCTGTTGAAGACGCGCCTGATTCTACAGCTCTTA ACAAGATCCAATCACAGGTAAGTCATAGGAACACACGTATTTCTCAAGAGTTGAAAGTCGGCGCCGGCCGCTCCAGAATCAAGCAGAAGCCACCCTTCCT TAAACTGCTGCTTGGTGCAAAGTTGAGAACTTTGGTTGGCCGTGTATGGATTTTAGCAGCGCCATAA
AA sequence Show only first row Show all	>Lus10016189 pacid=23142736 polypeptide=Lus10016189 locus=Lus10016189.g ID=Lus10016189.BGIv1.0 annot-version=v1.0 MSTVKKLTSAALPQILRRRSLSSTSMTAFPPLFNSPPSPLQLPSPFPASTFPNSTTAHFLLNPRIFPSSSFLCSQSSPQVTDSSRCWNCNNGQPERGLFL VCNSCSAIQPVDRSLNYFRLFGLEKKYEIEDGNLHDKYKDWQKKLHPDLVHSKSEKEREFAREQSARVGDAYRTLANPRIRAMYILKLVGVDVNEEETIS DPELLLEILQSDFHKQIMEIREAVEDAPDSTALNKIQSQVSHRNTRISQELKVGAGRSRIKQKPPFLKLLLGAKLRTLVGRVWILAAP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06410			DNAJ heat shock N-terminal dom...		Lus10016189 [exp]	0	1
AT5G40610			NAD-dependent glycerol-3-phosp...		Lus10014889 [exp]	7.3	0.7765
AT1G62850			Class I peptide chain release ...		Lus10024564 [exp]	26.7	0.6565
AT5G44230			Pentatricopeptide repeat (PPR)...		Lus10014279 [exp]	33.9	0.6716
AT5G42905			Polynucleotidyl transferase, r...		Lus10007199 [exp]	209.4	0.5919

Compare expression of checked genes

Lus10016189 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.