Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10660 479 / 1e-164 ATCPK2, CPK2 calmodulin-domain protein kinase cdpk isoform 2 (.1) AT5G04870 472 / 4e-162 AK1, ATCPK1, CPK1 calcium dependent protein kinase 1 (.1) AT2G35890 461 / 4e-159 CPK25 calcium-dependent protein kinase 25 (.1) AT2G38910 450 / 6e-154 CPK20 calcium-dependent protein kinase 20 (.1) AT4G35310 405 / 7e-137 CPK5, ATCPK5 calmodulin-domain protein kinase 5 (.1) AT2G17290 402 / 1e-135 ATCPK6, ATCDPK3, CPK6 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) AT4G38230 399 / 1e-135 CPK26, ATCPK26 ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 26, calcium-dependent protein kinase 26 (.1.2.3) AT1G35670 389 / 2e-131 CPK11, ATCDPK2, ATCPK11 calcium-dependent protein kinase 2 (.1) AT4G09570 384 / 3e-129 CPK4, ATCPK4 calcium-dependent protein kinase 4 (.1) AT5G12180 373 / 1e-124 CPK17 calcium-dependent protein kinase 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021248 [exp] 553 / 0 AT3G10660 809 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1) Lus10013603 [exp] 546 / 0 AT3G10660 803 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1) Lus10029358 [exp] 468 / 5e-163 AT5G04870 672 / 0.0 calcium dependent protein kinase 1 (.1) Lus10008958 [exp] 467 / 1e-161 AT5G04870 877 / 0.0 calcium dependent protein kinase 1 (.1) Lus10028862 [exp] 469 / 3e-161 AT5G04870 940 / 0.0 calcium dependent protein kinase 1 (.1) Lus10015992 [exp] 457 / 8e-157 AT2G38910 880 / 0.0 calcium-dependent protein kinase 20 (.1) Lus10012285 [exp] 456 / 2e-156 AT2G38910 884 / 0.0 calcium-dependent protein kinase 20 (.1) Lus10029346 [exp] 452 / 8e-155 AT2G38910 834 / 0.0 calcium-dependent protein kinase 20 (.1) Lus10016200 [exp] 451 / 6e-154 AT2G38910 868 / 0.0 calcium-dependent protein kinase 20 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G066700 [exp] 496 / 2e-171 AT3G10660 834 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1) Potri.006G200600 [exp] 493 / 2e-170 AT5G04870 842 / 0.0 calcium dependent protein kinase 1 (.1) Potri.008G014700 [exp] 477 / 1e-164 AT5G04870 922 / 0.0 calcium dependent protein kinase 1 (.1) Potri.010G244800 [exp] 474 / 2e-163 AT5G04870 899 / 0.0 calcium dependent protein kinase 1 (.1) Potri.006G199400 [exp] 454 / 1e-155 AT2G38910 899 / 0.0 calcium-dependent protein kinase 20 (.1) Potri.016G065700 [exp] 454 / 2e-155 AT2G38910 892 / 0.0 calcium-dependent protein kinase 20 (.1) Potri.004G207300 [exp] 421 / 7e-143 AT2G17290 969 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) Potri.009G168600 [exp] 416 / 8e-141 AT2G17290 968 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) Potri.T012800 [exp] 398 / 1e-134 AT1G35670 795 / 0.0 calcium-dependent protein kinase 2 (.1) Potri.019G083200 [exp] 382 / 2e-128 AT4G09570 835 / 0.0 calcium-dependent protein kinase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10016190 pacid=23142714 polypeptide=Lus10016190 locus=Lus10016190.g ID=Lus10016190.BGIv1.0 annot-version=v1.0 ATGGGAAACATTTGTGTTACAGCCAAAGGGATATGCAATCTACCATGGTGGTCAAACTCAGCAGGTATGTTGAAGCCTACCAAGACAGAGAAGCAATCAC CTAGCAAGAAATCGGATTCCGACAACCCTGCTGATTCCGGGGAGACTTCTGATAAGCCTCCCGAGCCGATGAAGATGGTGGAGAAGGACGAGGCCAATGC CAAGCCTGACAACCCACCATCTCTATCTCCAAAGTCGCCAGATGAGAAGAAGAAGACGCCTTCTCCCAAGGGAGGAGGAGGAGGAGGAGGAGAGTCTTCT TCTAAGCCTCCTGACGAGCCTAAGAAGGCCGTCAAGGAGAACGGGTCACCAATTCAATCCCCACAGAAGCCTCATGTCCCCGACGAAATCGCAAAGCCAG TGAGTCCTCAGGTTCAACCTGAGGCGGTGGTACCAATACCGCCACAGGTGGGACCGCTCAAGATAGAATCGAAGAGGCACGATCCGAAACCGGTAGAGAT CAAGCCTGTAGAATCTGGTGTCGGAGGAGATATGAAACCGGCAAAGAAAGCACACAATGTCAAAAGATTGGCAAGCGCAGGGCTTCAGACAGACTCGGTC CTGAAAACCAAGACAGGTCATTTGAAAGAGTACTATAACTTGGGGAGGAAGCTCGGACATGGCCAATTTGGAACGACTTTCCTATGTGTCGAAAAGGGGA CCGGAAAGCACTATGCTTGCAAGTCCATTGCCAAGAGGAAGCTGTTGACAATGGACGATGTCGAGGATGTCAGGAGAGAGATCGAGATCATGCATCACCT GTCAGGACACCCTAACATCATCAGGATCAAGTCCGCCTTCGAGGACAGTGTAGCGGTCCATGTCGTGATGGAGCTTTGTTCGGGAGGCGAGCTTTTCGAC AGGATCATTCAAAAGGGACATTACACCGAAAGGAAAGCTGCTGAGATCACCAGGACAATTTTTGGAGTCGTGGGAGCCTGCCATTCTCTAGGAGTCATGC ATAGGGATCTCAAGCCTGAGAATTTCCTCTTCATTGATGAGCAGGAGGATTCCCCTCTCAAGGCTATCGATTTCGGACTCTCGATATTCTTCAAGCCTGG GCAGATTTTCAACGATGTGGTTGGAAGTCCTTACTATGTCGCGCCGGAAGTTCTGAGGAAGAAGTATGGCCCTGAAGCTGATGTGTGGAGTGCTGGTGTA ATGGTCTACATTCTGTTAAGTGGAGTGCCTCCATTTTGGGCTGGTAAGAAAGCTTGGGAGCCAAAGACTGAAGATGAGATCTTCCATGAAGTTTTGCATG GGAATCCGGACTTCACATCGGACCCTTGGCCTCACGTTTCCGACAGCGCCAAGGAGTTGGTAAAGAAAATGCTCGTTAGGGAACCGAATAAGCGAATAAC CACCCACGAAGTTCTCTGTAAGTCGTAG
AA sequence Show only first row Show all	>Lus10016190 pacid=23142714 polypeptide=Lus10016190 locus=Lus10016190.g ID=Lus10016190.BGIv1.0 annot-version=v1.0 MGNICVTAKGICNLPWWSNSAGMLKPTKTEKQSPSKKSDSDNPADSGETSDKPPEPMKMVEKDEANAKPDNPPSLSPKSPDEKKKTPSPKGGGGGGGESS SKPPDEPKKAVKENGSPIQSPQKPHVPDEIAKPVSPQVQPEAVVPIPPQVGPLKIESKRHDPKPVEIKPVESGVGGDMKPAKKAHNVKRLASAGLQTDSV LKTKTGHLKEYYNLGRKLGHGQFGTTFLCVEKGTGKHYACKSIAKRKLLTMDDVEDVRREIEIMHHLSGHPNIIRIKSAFEDSVAVHVVMELCSGGELFD RIIQKGHYTERKAAEITRTIFGVVGACHSLGVMHRDLKPENFLFIDEQEDSPLKAIDFGLSIFFKPGQIFNDVVGSPYYVAPEVLRKKYGPEADVWSAGV MVYILLSGVPPFWAGKKAWEPKTEDEIFHEVLHGNPDFTSDPWPHVSDSAKELVKKMLVREPNKRITTHEVLCKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10660		ATCPK2, CPK2	calmodulin-domain protein kina...		Lus10016190 [exp]	0	1
AT4G35160			O-methyltransferase family pro...		Lus10024678 [exp]	2.4	0.9249
AT1G65450			HXXXD-type acyl-transferase fa...		Lus10029920 [exp]	3.9	0.9358
					Lus10011276 [exp]	5.3	0.9254
AT5G11730			Core-2/I-branching beta-1,6-N-...		Lus10034348 [exp]	5.5	0.9358
AT5G37060		ATCHX24	cation/H+ exchanger 24, ARABID...		Lus10031852 [exp]	6.7	0.9278
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10007909 [exp]	8.4	0.9252
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10011999 [exp]	10.2	0.9198
					Lus10011637 [exp]	11.0	0.9145
AT1G55520		ATTBP2, TBP2	A. THALIANA TATA BINDING PROTE...		Lus10017716 [exp]	12.0	0.8134
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10008682 [exp]	12.2	0.9068

Compare expression of checked genes

Lus10016190 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.