Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04870 209 / 2e-65 AK1, ATCPK1, CPK1 calcium dependent protein kinase 1 (.1) AT3G10660 207 / 4e-64 ATCPK2, CPK2 calmodulin-domain protein kinase cdpk isoform 2 (.1) AT2G38910 197 / 6e-61 CPK20 calcium-dependent protein kinase 20 (.1) AT4G38230 190 / 1e-60 CPK26, ATCPK26 ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 26, calcium-dependent protein kinase 26 (.1.2.3) AT2G17290 194 / 3e-60 ATCPK6, ATCDPK3, CPK6 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) AT4G35310 194 / 4e-60 CPK5, ATCPK5 calmodulin-domain protein kinase 5 (.1) AT4G09570 190 / 5e-59 CPK4, ATCPK4 calcium-dependent protein kinase 4 (.1) AT1G35670 188 / 2e-58 CPK11, ATCDPK2, ATCPK11 calcium-dependent protein kinase 2 (.1) AT5G23580 173 / 2e-52 ATCDPK9, CPK12, CDPK9, ATCPK12 CALCIUM-DEPENDENT PROTEIN KINASE 12, ARABIDOPSIS THALIANA CALMODULIN-LIKE DOMAIN PROTEIN KINASE 9, calmodulin-like domain protein kinase 9 (.1) AT5G12180 155 / 1e-45 CPK17 calcium-dependent protein kinase 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029358 [exp] 294 / 3e-100 AT5G04870 672 / 0.0 calcium dependent protein kinase 1 (.1) Lus10021248 [exp] 261 / 8e-85 AT3G10660 809 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1) Lus10013603 [exp] 259 / 4e-84 AT3G10660 803 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1) Lus10008958 [exp] 216 / 8e-69 AT5G04870 877 / 0.0 calcium dependent protein kinase 1 (.1) Lus10028862 [exp] 213 / 6e-67 AT5G04870 940 / 0.0 calcium dependent protein kinase 1 (.1) Lus10015992 [exp] 197 / 9e-61 AT2G38910 880 / 0.0 calcium-dependent protein kinase 20 (.1) Lus10012285 [exp] 195 / 4e-60 AT2G38910 884 / 0.0 calcium-dependent protein kinase 20 (.1) Lus10009427 [exp] 191 / 3e-59 AT4G09570 792 / 0.0 calcium-dependent protein kinase 4 (.1) Lus10022986 [exp] 192 / 4e-59 AT4G35310 950 / 0.0 calmodulin-domain protein kinase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G066700 [exp] 243 / 3e-78 AT3G10660 834 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1) Potri.006G200600 [exp] 234 / 7e-75 AT5G04870 842 / 0.0 calcium dependent protein kinase 1 (.1) Potri.010G244800 [exp] 221 / 4e-70 AT5G04870 899 / 0.0 calcium dependent protein kinase 1 (.1) Potri.008G014700 [exp] 216 / 3e-68 AT5G04870 922 / 0.0 calcium dependent protein kinase 1 (.1) Potri.019G083200 [exp] 199 / 4e-62 AT4G09570 835 / 0.0 calcium-dependent protein kinase 4 (.1) Potri.016G065700 [exp] 196 / 2e-60 AT2G38910 892 / 0.0 calcium-dependent protein kinase 20 (.1) Potri.013G112500 [exp] 193 / 5e-60 AT1G35670 815 / 0.0 calcium-dependent protein kinase 2 (.1) Potri.T012800 [exp] 192 / 9e-60 AT1G35670 795 / 0.0 calcium-dependent protein kinase 2 (.1) Potri.006G199400 [exp] 192 / 5e-59 AT2G38910 899 / 0.0 calcium-dependent protein kinase 20 (.1) Potri.004G207300 [exp] 191 / 6e-59 AT2G17290 969 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10016191 pacid=23142675 polypeptide=Lus10016191 locus=Lus10016191.g ID=Lus10016191.BGIv1.0 annot-version=v1.0 ATGTTCAGGATGATCGACACAGATAACAGCGGTACAATCACCTTCGAAGAGCTCAAAGTCGGACTCAAAACCTTCGGTGCAAACCTCGATGAGTCCGAAA TCTATGACCTCATGCAGGCTGCTGACATCAACAACAACGGGACAATCGATTACCCGGAGTTCATTGCAGCGACGCTGCATTTAAACAAAGTCGAGAGGGA GGATCGTCTTCTGACAACCTTTTCATACTTCGACAAGGATGGAAGCGGATACATTACTCTCGACGAACTCCAACAAGCCTGCAACGAGTTCGGGATGAAG ACCGTTGAGTTAGAGGAGATGATTCGAGAAGTAGATAAGGATAATGATGGTCGCATAGATTATAACGAGTTCGTGGAGATGATGCAAACGAGTCACTCAG AAATCGGTTCGACCGGTTTGCAAGGTAGAAATGTAGGGATTTCTTTTAGATAG
AA sequence Show only first row Show all	>Lus10016191 pacid=23142675 polypeptide=Lus10016191 locus=Lus10016191.g ID=Lus10016191.BGIv1.0 annot-version=v1.0 MFRMIDTDNSGTITFEELKVGLKTFGANLDESEIYDLMQAADINNNGTIDYPEFIAATLHLNKVEREDRLLTTFSYFDKDGSGYITLDELQQACNEFGMK TVELEEMIREVDKDNDGRIDYNEFVEMMQTSHSEIGSTGLQGRNVGISFR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35310		CPK5, ATCPK5	calmodulin-domain protein kina...		Lus10016191 [exp]	0	1
AT2G20710			Tetratricopeptide repeat (TPR)...		Lus10002062 [exp]	1.0	0.9321
AT4G10260			pfkB-like carbohydrate kinase ...		Lus10040562 [exp]	1.7	0.7956
					Lus10039269 [exp]	5.8	0.7434
					Lus10029489 [exp]	6.3	0.8206
AT3G55700			UDP-Glycosyltransferase superf...		Lus10040724 [exp]	10.8	0.7871
					Lus10003695 [exp]	12.0	0.7871
AT5G47670	CCAAT	NF-YB6, L1L	"nuclear factor Y, subunit B6"...		Lus10008978 [exp]	13.2	0.7871
					Lus10020958 [exp]	14.2	0.7871
					Lus10021906 [exp]	15.2	0.7871
AT4G35700	C2H2ZnF	DAZ3	DUO1-activated zinc finger 3, ...		Lus10041633 [exp]	16.2	0.7871

Compare expression of checked genes

Lus10016191 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.