Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26922 67 / 2e-12 F-box/RNI-like superfamily protein (.1) AT2G04230 66 / 1e-11 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) AT5G56440 64 / 3e-11 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G32375 64 / 3e-11 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G52670 64 / 4e-11 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1) AT4G00160 64 / 4e-11 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G52680 64 / 5e-11 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT4G13985 63 / 8e-11 FBD1 FBD-associated F-box protein (.1) AT1G78760 62 / 1e-10 F-box/RNI-like superfamily protein (.1) AT3G49030 62 / 2e-10 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029357 [exp] 287 / 1e-94 AT3G28410 79 / 1e-15 F-box/RNI-like superfamily protein (.1) Lus10001507 [exp] 139 / 6e-38 AT5G56440 91 / 6e-20 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10002819 [exp] 138 / 9e-38 AT5G02910 77 / 1e-15 F-box/RNI-like superfamily protein (.1.2) Lus10026190 [exp] 108 / 1e-26 AT1G16930 80 / 3e-16 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10042331 [exp] 104 / 2e-26 AT3G18150 67 / 7e-13 RNI-like superfamily protein (.1) Lus10007058 [exp] 107 / 6e-26 AT5G56810 77 / 2e-15 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10042477 [exp] 105 / 3e-25 AT1G16930 77 / 2e-15 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10024696 [exp] 104 / 4e-25 AT5G22720 75 / 1e-14 F-box/RNI-like superfamily protein (.1.2) Lus10002239 [exp] 97 / 3e-22 AT1G69630 91 / 5e-20 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002100 [exp] 77 / 1e-15 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.015G002001 [exp] 57 / 4e-09 AT2G04230 59 / 9e-10 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.015G011200 [exp] 57 / 7e-09 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.014G039700 [exp] 56 / 2e-08 AT1G13570 265 / 7e-85 F-box/RNI-like superfamily protein (.1) Potri.011G104200 [exp] 56 / 2e-08 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104300 [exp] 56 / 2e-08 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.001G337200 [exp] 54 / 5e-08 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.002G132400 [exp] 54 / 6e-08 AT1G13570 251 / 3e-79 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 54 / 6e-08 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G024200 [exp] 53 / 1e-07 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10016192 pacid=23142727 polypeptide=Lus10016192 locus=Lus10016192.g ID=Lus10016192.BGIv1.0 annot-version=v1.0 ATGATGATCGGTAGGGTAGCTAAGAAGCGTCGCAGCCACTTTGGAGGAGCTTGGAAAAGGCTCGACAGGTTAAGCGATCTTCCAGGCTCTGTTCTTTTTC GCATACTTTCGTTACTCGAGACCAAAACCGTCGTTCAGACCTCTGTACTGTCGCGAAGGTGGAGATGTGTCTGGAAACATGTCCCTGCACTCAAATTCGA TTACGCTGACTTCGATTTCGAACCTGATGTGCTTGATGCGTTCGTTGACAAGGTTTTTTCACTCCACTATCCCACCAATGTCGATAAGATCAGCTGCTAT ACGGGTGCGTGGGGTGACCCTTTGGTTGTTAAGGTTCTCAAATTTGCCGTCTCCCATCAGACTCGACATTTATCGTGGAAACTCATTCTATCCCGATTGT GGAGATCCGTTTGGAAACACGTTCCGGTCCTCAATTTCGACCGCCGATCTTTCCAAGACTATCACAATTTCAGATGGTACGTGGACGGAGTTCTGTCGTT TCGAAGTCGGTTCACCCTAGACGAGATCGTCTACATCGACAATGTAGATTCAGGGAAGAAAGGAGAAGCTATCTTCCTGCCTCTAAAAGCTAATCCATAT GGATTCTACCATGGTGTTAAGCGCTTAGCTCTCGACTTGGAATTCGATGCCACCATGGCGGATTGCTACACGTTTTCCGAGCTGTTTGGCTCGAAATCCA AATACGGTTCCTTCGATCTCGATCTCAAATCCCTACGGTTCCAAGGAATTGCCCTCGATGTCGGATTCAAATCATTCGGTTTTCAAACGCTGACCGATTT AGAGCTAATTGGGTGCAATCTCTTGTCTGATAATCACGAGGCACTCGGCCGGATTTCTGAGTTTCTGGAACAACAACCTTCCCCCTTTACTAGACTGGAG AATCTGAATCTGGAATTGGAGTCCGATGAGGTACCTCGTACCGTGGTGAGTTACTTTGTTAAAGGATCTGCAGATTCTCGTATCAAGGTTTTGAATGAAT CCGGTGGCATCCAGTTTTCTGTACCAATTGAGATTCACTGA
AA sequence Show only first row Show all	>Lus10016192 pacid=23142727 polypeptide=Lus10016192 locus=Lus10016192.g ID=Lus10016192.BGIv1.0 annot-version=v1.0 MMIGRVAKKRRSHFGGAWKRLDRLSDLPGSVLFRILSLLETKTVVQTSVLSRRWRCVWKHVPALKFDYADFDFEPDVLDAFVDKVFSLHYPTNVDKISCY TGAWGDPLVVKVLKFAVSHQTRHLSWKLILSRLWRSVWKHVPVLNFDRRSFQDYHNFRWYVDGVLSFRSRFTLDEIVYIDNVDSGKKGEAIFLPLKANPY GFYHGVKRLALDLEFDATMADCYTFSELFGSKSKYGSFDLDLKSLRFQGIALDVGFKSFGFQTLTDLELIGCNLLSDNHEALGRISEFLEQQPSPFTRLE NLNLELESDEVPRTVVSYFVKGSADSRIKVLNESGGIQFSVPIEIH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26922			F-box/RNI-like superfamily pro...		Lus10016192 [exp]	0	1
AT1G53050			Protein kinase superfamily pro...		Lus10000584 [exp]	4.7	0.7305
AT5G12100			pentatricopeptide (PPR) repeat...		Lus10035577 [exp]	7.1	0.6337
AT2G19560		ESSP1, AtTHP1, ...	ectopic expression of seed sto...		Lus10032680 [exp]	12.6	0.7145
AT4G17360			Formyl transferase (.1)		Lus10007482 [exp]	19.9	0.7104
AT5G01260			Carbohydrate-binding-like fold...		Lus10018226 [exp]	20.4	0.6331
AT2G29540		ATRPAC14, ATRPC...	RNApolymerase 14 kDa subunit (...		Lus10016452 [exp]	20.5	0.6793
AT4G31580		SRZ22, RSZP22, ...	RS-containing zinc finger prot...		Lus10020123 [exp]	22.6	0.7149
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Lus10036653 [exp]	23.9	0.7219
AT3G48660			Protein of unknown function (D...		Lus10035198 [exp]	26.0	0.6888
					Lus10005511 [exp]	34.1	0.6072

Compare expression of checked genes

Lus10016192 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.